HsaINT1037734 @ hg38
Intron Retention
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9560818-9564325:+
Coord C1 exon
chr12:9560818-9560968
Coord A exon
chr12:9560969-9564169
Coord C2 exon
chr12:9564170-9564325
Length
3201 bp
Sequences
Splice sites
5' ss Seq
CCTGGGAGG
5' ss Score
-3.95
3' ss Seq
TGACCAACAGTTTCCTGCTCTAC
3' ss Score
-16.28
Exon sequences
Seq C1 exon
CTCAGTGCTCTTACTTTTAAGACATTGGAGAGAATGAAAAAATATGTATTCATTGATGAAAATGTTCAAAAACAGACCTTAATCTGGCTTTCAAGCCAACAGAAAACAAGCGGCTGCTTTAAGAATGATGGCCAGCTTTTCAACCACGCCT
Seq A exon
GGGAGGTGAGAGAGGAGAAGCACCAGGCTTTCCTTGTTCCTGGGCATTGCCTGCCTTGCCCTGCCTCTGGCTTTCCTGATCTGGAATATGAATATTCTTCCTGTGCATATGAAACCTTCTGAGGCACTGCAGTCCTGGGCCTGTGGTGGGTTGGTCAGCAGCACCATTCCTGCTTTGTGCATGTTTAACTACAGCCTGGATGTGACTTCTTCTGAGTCTCTTGTCTGCCTTATTCAGTCTCTAGTCCTTCCCGAGTCAGTCCTCTTCAGAAATTAAACTAGAAATAGAAGGGAGGGGAGAGAAAGGGAACCTAGAAAAGAAACTTTCATAAATTTGGAGACAGTCAATGTATAAAGGGAGGGGGCTGTGAGTGTATGAGGAAGGAAAGTTTATTCCTGTCCATGAATGGCAAGAAAGTTCTGGGGAGAATATCTAGTAATTCATATTGTTTCAATGAAGCAAGTTTTTCTAAGACCCTCTCAAGGAAAAATTCAAAGGCCAAGCTTGCCCCGGGGCCAAAGTACAAATGAGGTGAAGTATATCCTTGGCAAAATCCAACCCTTTTCCTGTCCATATTTACGTAAATCCCTCCCTTCCAACTTCCTTTCTTTGCAGATACCTGTCCATCTCCAGCCCATTTTCTATCTCCTTTCCCCTCCTTTTTTTCCCTGTGGTTGCTCAAAATCTCCTATCATGGCATTTTAGCATGCTCTGATGGCCCCTGAAATACCCTGAGCTTTTCTTCAGCATCCTTCCTCATAATCATCACTCCTGTTCTTGAAACCCAGAATGCATATCTAATCCACACACTCTGATATTTAATTTGCATGCAAATTGTATTCAAATTGCTTTGTGGTATTTTTAATGTATTCCAAACTTATTCCTTACAACAGGAGGACCCTGATGGAGATGAGCTCTTACTCCTTCATAGAAAAATCAAAAACTTTCCCACGTTCTCTTCTAAAACATCTTCACATCTTTCTTCTTATTGGATTCATTACTGGTGAATCATTGCTGATTACTGCTACAGTTTGTCTGATCTTACCTAGTATTTTCTCTATAATTAAATATCTGTGTGGGTGGGTGTCTGTGTGTGTTTTGAGTTGAGAGAAATAAAAATGCAAGGGAAAAATCAAAGCTTACACTGCAGAGGAATGGTGATCCTACTTGCTGTAATTTAGATGTACTGACAGTCCTCGTACCTCATGTTAGTGTCTACCATATGCTGTTATTTCCATCTTAAACACTTGGTTTCTCAGAAGTATTTCTTTTCTGAAGAAGACAGGAGTTGTCCTTTGCTTAAATAGATAAAATGGGAAGCTTCTACAAGATCAGTAGATCCCAGATGCCATTCTGAATGCTATTTGCATCAGAGTCACTAGAGCACCCATTAAAATGCATTTCGCTGTCGTATTCCCAAGTTTTTTGAACCAGAATCTCTGTGTAGACACTGGTTGATTTAAATACCCCAGGGGACTTTTATGCACAGTCAGTTTGCAAACCACATGATTTATAAATGAGTTTCTCATTTTACACTGTAAGAATCTGAGACTTGATTCTGGTGATCTCCTAGGGTGCTTTTCCAGGAATTTCCAGGAATCTTCACGGCAACTTTCTGCTTCACCTCATTAGAAATTCTTTGTTGGCTTTTTTCAGATTTATACCAAGCGGAGACAAATAGAGTCCTGTGAATTCCTTAGAATGCATGCTTAACACCAGGCCACATAAATACGATTGAAATTAATTGTTATAACAACTTAATAATTATGATTTAATTATTGCATAGAGTCTGAATGAATTCTTGCTTAGATAGTATGATTATTAACCATCTAATTTAAAAACTACACATGTTCGGGTGTTTTTATGAATAATGGTATTTGTTCCAGTATTTTTTTCATACCTAGTTTTACTTCAAAAGAATACTTGCTATTTTGTGCTCTGCTGTCCCGAATGACTCATTGTTCCTTTGTTTTCAGGGTGGAGATGAAGAGGACATTTCACTCACTGCGTATGTTGTTGGGATGTTCTTTGAAGCTGGGCTCAATTTCACTGTATGGATTCCCGTCATTTCTGATTTCAGGCAGCTGAATGCACATTCAATAGACTGTAGAGTCAGAGTCACTTGAGATTCTAAGACTGGATGAAACCCCGAGATAACATTTAGTTTATTACCACCCTTTAAATTCATGCTGTTCAAACTGTTTTTCATTCATAGACAGCTTTGAAAAACAGGATTGGGTTTCTCCCTAGGGAGAATACACATATGCACACAAAAAAGAGTTATTCACACAATTGCAGGCATTCACATCTCTCCTGAAGTTCAGCCATGAATTTCAGATTAAGAACCACTGTTCTAAGTAAAGCCGTGGCCTAGTATTCTGTTTCTCTCTAAACAATAAGTGAGTAAACATTTTCAACTTAAGTGTGGCTCACCCTAGCCACCTCCCAATCCATAGATTAGATTTCCAAAATCTATTCCTGAACTAAGATGCTAGGAATTGTCAGGGTCATTAGTATACCCTGAAAATTATCTTCACAAATGTAAGCCTCTATTTTAGGCACTAGAAAAAAAAAAACTCTTAGGCCTATGATAAATTTGGATGCTTTGCCGCATAGAAGACATTCATAACTAAAATATCACTGATCAAATATAAAAACTGCCATTTTCTTACTAAATTTCATTGGGCCTGGCATGGTGGTTCATGTTTATAATCCAAGCACTTTGGGAGGCTGAGGTGGGTGGATTACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTATCTCTACTAAAGATACAAAAATTAGCTGGGCTTGGTGGTGCATGCCTGTGATCCCAGCTACTCAGAAGATGGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGGGTAACAGAGCAAGACCCTATCTCAAAAAAAAATTATTGCTTAGGTACTAATAATGACATTATAAATTTATTTTAATGATATTTTTGAAGGATAAAATATATGTGTATATATAAATGGATTTGTATGTAAAATATACTTTGAGGATATATTATATATATTATAAACAATGATTAGTTTAAATGTTCAACAAGTTCATGGAATGTTCGGGTATCAGTTTACAATATATGATTCTTCTTCCTGACCAACAGTTTCCTGCTC
Seq C2 exon
TACGAAACGCACTCTTTTGCCTTGAAGCGGCATTGGACAGTGGTGTCACTAATGGCTATAATCATGCAATTCTAGCTTATGCTTTTGCCTTAGCTGGAAAAGAGAAGCAAGTGGAATCTTTACTCCAAACCCTGGATCAATCTGCCCCAAAACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776:ENST00000518709:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PU(2.2=5.9)
A:
NA
C2:
PF076789=A2M_comp=FE(38.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains