HsaINT1037735 @ hg38
Intron Retention
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9565092-9570892:+
Coord C1 exon
chr12:9565092-9565333
Coord A exon
chr12:9565334-9570709
Coord C2 exon
chr12:9570710-9570892
Length
5376 bp
Sequences
Splice sites
5' ss Seq
GCAATATGT
5' ss Score
-2.61
3' ss Seq
CTGCGATGGCGATCCTAAGAGCC
3' ss Score
-15.78
Exon sequences
Seq C1 exon
ATAATGTCATCTACTGGGAAAGAGAAAGGAAACCCAAGACAGAAGAATTTCCATCCTTTATTCCCTGGGCACCTTCTGCTCAGACTGAGAAGAGTTGCTACGTGCTGTTGGCTGTCATTTCCCGGAAAATTCCTGACCTCACCTATGCTAGTAAGATTGTGCAGTGGCTTGCCCAACGGATGAATTCCCATGGAGGCTTTTCTTCCAACCAGGTGATTAATGTAGGCCTGATATTAATAGCA
Seq A exon
ATATGTTTAATGCAGAAGCTGTAACTCTGTGACGAGTGAGATATTAATAGTAAAGCTATCACAACAAACCCTTTCTGAGAAGAAGAATCTTTGGTAATAAGATTCTTATTATCTTATTAATCTTATTTTATTTCCTCAACAATTATTTATTGGCCAGTTATTGTGTATCAGGCACTCTACTAGGAAGCCTCTAAATAGAAATGAATGAAATGAGGTCTCCTGTTCCAGGAATTTATGACCGTTTGTATCTTCATTCACACAGCAAACATAGAATAAGTCTAGAGGACATTTTTGTCGTAAGCACCACTCTTGGTGGTACATTAGACACCTGATGATACTCTGTTCAAATTATATACGGGCCAAAAAGAAAGCTTTCGCTCTAGTTCTGTGGGCTATACACTGGGAAAAGCAAATGAAAAGAAGGAAAACAGGAGAAATGGGGGGTATGAGAAACAATGACATGTTTTTCCTTACTTGGAAACAAATTGAAAATGCAAAAAAGCAGTTTTATCTCCATAAGAAAAATCTTCATTTCTCTTTGTGTTTGGTCTTAGTTTCGGAGTAAAACCATATGCTAATGAATTTCCAAAGATCTTTTCCTGATTCTGAATTCCCTTCTTTGAAGATGAACAGAAAAAAAAGAATTATCCATGGCAGCCACAGGGGCCACTGAATTATGTAATGCCTTAACTTTTAGAAAAGGTTTGACACCATTTTTAACCAAGGAGGCTATATTTTATTAAAAATTTTTAGAAAGTAAAAATATAATTAACATTTGTTGAAAAAAATTAATTTAAGTGGAAACAATTTGCACAAGCAAGGATATTTTCCTACCATTCAGGATATTGCTTCTTGGTGTTTTGCTGACCTGTTTTAGGAACATTTCTAAGGGTTGATATGAAGTCCATTGTCAAATGATGACCAATATTGTGTTGTAACTGAGCTTGGATCATTGTTTGTGCTGTTCTGTGCAGGAAACTGCAGTTTGTCTTCTTGCCATAACCCGCTACATAACCCGTGAGGCGGGGACTGAGAGCCAGGAGGGGAAGAGGGGTAGAGGATGATACTAATTTCAGCATCGCCGGCTGTGTTCACCCAGCCTGTGAAATTGTTATTAATATCCTGAAAGGGAGAGAATGATATTACTCCCCATAATAGACAGATACGACTCCGCATAATAGAGCACAAGGTGTACACCCACCCTGTGATATTCTTCCTCATATTCAGAGGCCGAGAAGTTGATATTACTCCCACTATCACAGGACGTATACACCCTCGTGTTAGATGGTCCTTAATAATATTCCAAGGCGGAGTGGGTGATGTGACTACATATATGGCAGAAAGGGTACACCCCCCTGGGATATTGTTCCCACGATCCTTGAGGGAAGAAAATGATATTACTTTCAATATGACAGAAGGTGGACACGCCCCCACTGATATTGTTTCTAATTGCAACGTGGGAGAGGAGGATGTGACACGGGATATCGCAGGGAGTAGAAACACCCCTGTGTTACTGTTCTTAATATTCAGGGAGGAAGAGGATGATATTACTCCCAATACAGACGGGTGTACACCCGTCTGTGAAACAGTTCATAATCTCCAGAGGTCTCCAGAGGGGGAGATGATATTACTCACAATATGGTAAACAGGCTGAGTCCACCGTGGATCCTAAGAGCCAGCGGGGGAAGAGGGGCTGGCTCTCAGTCACCACAGCATGGGGGGCCTTTATGTTCAGGTTTTGCCCAAGAGTCAGCTTATTTGCTTCTAGTACTAGCAGGGTAGATGCTGCCAAGGCCCTCAAACAGGGGGGCCATCCCTTAGAAACCCTGTCTAGTTGTTTAGAGACGTAGGCCACCGGCCTCAGCCAGGTCCCCACAGTTTGGGTTAAAAGTCCAGCTGCCATCTTTTCTCTCTCTGACTCATACAATGGAAAAGGTTTTGTCAGATCGGGTAGCCCCAGTGCTGGGGCTGCCAGAAGTTTTTCCTTTAACTCATGAAAACCTTGCTGTTGTTGGGATCCCCATTGGAAAGCTTCCCGGTCCCCGCCCCCTTTGTGACCTCATACAAAGGCTTGGCTAATACTGGAAAGTTTGGGATCCACTGTCTTCATAACCCCACAGCTCCTAAGAATTCTCTCACCTGCCTTCTGCCCTTAGGCTCCGGTAGATTGCAAACGACCTGCTTTCTTTGTGATCCCGGCTGCATTCGGACCCCTGTCAGACAGTAAATCCCAAGTAAGGTACCTGCCATCGGCAGATCTGAGCTTTCTTCTTGGACACCTAAAACCCACAGTCCTCCACTTGGGTCCTAAGGGTCTTAGGATCCGCGATGGGGGTAATAACCAGCGGGGGAAGAGGGGCTGGCTCTCAGTCCCCGCCTCGCGGGGGGTGCCTCCCCCCTCTGCGATGGGGGTTCCAAGAGCCAGGGGGGGAAGAGGGGCTGGCTCTCAGTCACTGCCTCGTGGGGGATGCCTCCCCCCCTGCGATGGGGGTCCTAAGAGCCAGGGGGGTAAGAGGGACTGGCTCTCAGTCCCCGCCTCGCGGGGGGGTGCCTCATCCCCCTGCGATGGGGGTCCTAAGAGCCAGGAGGGGAAGAGGGGGAGAGGATGATACTAATTTCAGCATCGCCGGCTGTGTTCACCCAGCCTGTGAAATTATTAATATCCTGAAAGGGAGAGAATGATATTACTCCCCATAATAGACAGATACGACTCCGCATAATAGAGCACGAGGTGTACACCCACCCTGTGATATTCTTCCTCATATTCAGAAGCCAAGAAGTTGATATTACTCGTAATATCGCAGGACGTATACACCCTCGTGTTAGATGGTCCTTAATAATATTCCAGGGCGGAGTGGGTGATGTGACTACATATATGGCAGAAAGTGGAAACCCCCCTGAGATATTGTTCCCACGGTCCTGGAGGGAAGAAAATGATATTACTTTCAATATGACAGAAGGTGGACACGCCCCCACTGATATTGTTTCTAATTGCAACGTGGGAGAGGAGGATATGACACGCGATATCGCAGGGAGTAGAAACACCCCTGTGATACTGTTCTTAATATTCAGGGAGGAAGAGGATGATATTACTCCCAATACAGATGGGTGTACGCCCTCTGTACACTGAGGGTGTACACCCGTCTGTGAAACAGTTCATAATCTCCAGAGGTCTCCAGAGGGGGAGATGATATTACTCACAATATGGTAAACAGGCTGTGAGTCCACCGTGGATCCTAAGAGCCAGGGGGGGAAGAGGGGCTGGCTCTCAGTCACCACAGCATGGGGGGCCTTTATGTTCAGGTTTTGCCCAAGAGTCAGCTTATTTGCTTCTAGTACTAGCAGGGTAGATGCTGCCAAGGCCCTCAAACAGGGGGGCCATCCCTTAGAAACCCTGTCTAGTTGTTTAGAGACGTAGGCCACCGGCCTCAGCCAGGTCCCCACAGTTTGGGTTAAAAGTCCAGCTGCCATCTTTTCTCCCTCTGACACATACAATGGGAAAGGCTTTGTCAGTTCGGGTAGCCCCAGGGCTGGGGCTGCCAGAAGTTTTTCCTTTAACTCATGAAAGCCTTGCTGTTGTTGGCATCCCCTTTCCAAAGCTTCCCGGTCCCTGCCCCTTTTGTGACCTCATACAAAGGCTTGGCTAATACTGCAAAGTTTGGAATCCACAGTCTCCAAAACCCCACAGCTCCTAAGAATTCTGTCACCTGCCTTCTGCCCTTAGGCTCCCGTAGATTGCAAAGGACATGCTTTCTTTGTGATCCCGGGCTGCATTCGGACCCCTGTCGGATAGTGAATTCCAAATAATGTACCTACCGTCGGCAGATCTGAGCTTTCTTCTTGGACACCTAATACCCACAGTCCTCCAGGTGGGTCCTAAGGATCTTCGGATCCGTGTTGGGGGTCCTAGCCAGGGCTGGAAGAGGGGCTGGCTCTCAGTCCCCGCCTCACGGGTGGTGCCTCCCCGACTGCGATGGGGTTCCCAAGAGCCAGTGGGGGAAGAGGGGCTGGCTCTCAGTCCCTGCCTCGCGAGGTGTGCCCCCCCCTGTGATGGGGGTCCCAAGAGCCAGAGGGGGAAGAGTGGCTGGCTCTCAGTCCCCGCCTCGCAGGCGGTGCCTCCCCACTCTTCGATGGGGTTCCCAAGAGCCAGGGGGGGTAGAGCGGCTGGCTCTCAGTCCCCGCCTCGTGAGGTGTGCCTCCCCGCCCTGCGATGGGGGTCCCAAGAGCCAGGGGGAGAAGAGGGCCTGGCTCTCAGTCCGCGCCTCACGGGGGGTGCCTACCCCGCCTGCGATGGGGGTCCTAAGAGCCAGGGGGGAAAGAGGGGCTTTCTCTCAGTCTCTGCCTCGCGGGGGGTGCATCCCCCCACTGCGATGGGGGTCCTAAGAGCCAGGGGAGGAAGAGAGGCTGGCGCTCAGTCCCCGCCTCGCATGGGGTGCCTCCCCGCCTTGCATGGGGTGCCTCCCCGCCTTGCGATGCCCTCCCCGCCTTGCGATGCGGGTCCGAAGAGCCGCGTGGGGGAGAGGGGCTGGCTCTCAGTCCCCGCATCGCGTGGGGTGCCTCCACCCCCTGCGATGGGGGTCCTTAGAGCCGGGGGGGAAGAGGGGCTGGCTGTCAGTCCCCGCCTCGCGGAGGGTGCCTCCCCACCTTGCGATGGGGGTCCCAAGAGCCAGGGGGGGAAGAGGGGCTGGCTGAGTCCCCACCTCGCGGGGTTTGCCTCCGTCCCCACCTCGCGGGGTTTGCCTCCCTCCCTGCAATGGGAGTCCTAAGAGCCGGGGGTGGGAGGAGCTGGCTCTCAGTCCCCGCCCCGTGGGGAGTGCTTCCGCCCCCCGCGATGGGGGACCTAAGAGCCAGGGGAGTAAGAGGGGCTGGCTCTCAGTCCCCACCTCGCGGGGGGTGCCATCCCCCCCCTGCGATGGGGGTGCCTTCCCCCCCCCTGCGATGGGGGTCCCTTCCCCCCCCTGCGATGGGGGTCCCTTCCCCCCCCTGCGATGAGGGTCCCTTCCCCCCCCTGCGATGGGGGTCCCTTCCCCCCCCTGCGATGGTGGGGGTCCCAAGAGCCTGGGGGGCAAGAGGGGCTGGCTTTCAGTCCCTGCCTCGCGGGGGGTGCCTCCCCACCCTGCGATGGGGGTCCGAAGAGCCTGGAGGGGGGAAGAGGGGCAGGCTCTCAGTCCCCGCCTCGCTGGGGGTGCCTCCCCCACCTGTGACGGGGGTCCTAAAAGCCAGGGGTGGAAGTGGGGCTGGCTCTCAGTCCCCGCCTCGCGGGAGGTGCCTCCCCACCCTGCTATGGGGGTCCTAAGAGCCGGGGGTGGGAGGGACTGGCTCTCAGTCTCCGCCTCGCGGTGGGTGCCTCCCCGCCCTGCGATGGCGATCCTAAGA
Seq C2 exon
GCCCGGGGGGAAGAGGGGCTCTTCTCTAAGGATCAAAACACTGTCACCTTTAGCAGTGAAGGATCCAGTGAGATTTTCCAGGTTAACGGTCATAACCGCCTACTGGTCCAACGTTCAGAAGTAACACAGGCACCTGGAGAATACACAGTAGATGTGGAAGGACACGGTTGTACATTTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776:ENST00000518709:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(58.4=100)
A:
NA
C2:
PF076789=A2M_comp=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains