HsaINT1041085 @ hg38
Intron Retention
Gene
ENSG00000165689 | SDCCAG3
Description
serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:HGNC:10667]
Coordinates
chr9:136407826-136410239:-
Coord C1 exon
chr9:136410090-136410239
Coord A exon
chr9:136407939-136410089
Coord C2 exon
chr9:136407826-136407938
Length
2151 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTGATGTCTGTTATTTCAGATG
3' ss Score
8.09
Exon sequences
Seq C1 exon
CTCCAGCGTTCTATGAGCGCCGGTCTTGTCTCCCCCAGCTAAATTGTGAGCGCCCCCATGGCAGGGACCTGGACTCCCCCTTCTTCGGCATTCGGCCGGCCTTTATGTGCTATGTGCCCAGCCCGGTGCTGGCTTCCGTGGGAGACACAG
Seq A exon
GTGAGAGACGAGGGCGCCGGCCCCGGGGACGCTTCCAGTTCCCGCGCCACGTGTGGCACCTCCGCTGCAGCACGAGCTCGTCCATTGACCCATCAATGTGCAGAGCGCTCACTGCGTGCCAGGCACTCGGAATTCAAAGGCGGAGTCCCCTGCTAGGAGCTCACAGTCTGGTTGCGGGGAGACCTCCCCCAAGACAGACAGTTCCAGTACAGGATGGTTAGTGCCCGGGGAGCACAGGAGCCCGCCCGCTTTCCTCGTGGGGCTGGAGTCGGGGTGCCTTCACCTAGTGGGCAGTGATTGGAAACCGAGCTGGAGCATTCCATCTGCCTCCACAGCCGGGCAGTGGCCAGATCTGGTTCGTCCTCGTTCTACCCAAGCAGAAGTGCTGCTGGGTGCCCGGGGTGTGCAGGAGTGTTTGTGTGGTTATGCCAGGATCTGAGGACATTCGGGGGTTGTCACAAGACAAGAGGACGCGCTTGCCCCGGCTGGGCTTCAAAATCTGCTGAGGAGCCGCTTTCAGACCACGGACACCAGGGCCAGTCTGCAAGTCAGGCCATCTCCAGGGTCACAAGTCTGGGAGCTTGTGTTTTTTTTAAAGTTTTCTCGGCTGACCGGGCGCAGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACAGGGTGAAAACCCGTCTCTACAAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCAGGTGCCTGTAGTCCCAGCTACTCGGGAGGATGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGGGAGCCGAGATCGCACCACTGCACTCCAGCTTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAGTTCTCTAGACTGTGAGAACCACTGCAGTGGAGACTCCATGTGCAAAAGAAAAAAACCAAATGTGAGGTCATAAAGACTTCCTGCCAGCATGGTGGGTGACATTGTTTCTTTGCAGATTTTGGCTATGGAAAGGGGAAATGTTCTAAGCAGAGCCCGTCAGGAGCCCACGGGACACATTTTGGAGGTAGAGTAGTTCAGCAACCTTTTCTTCTTGTCTCCATCCAACACAGTGCCAGGCACGTGTCTGGTGGGACTGTCAATGTGACTGGCTATGTGGTGTAGCTGGAGCCCAAAAGAGCAGGTGGGGGTGGGATTTCAAGGGTTCAGTCTTGATCCTAGAGTAGCAGCGAGGTGACATCAGGGAGCGGGGAAGCCCCACCTGGGGGGCTGGGGCCACAGGAGCCAGCTTTACATGGGGCTCACAGCTGGGAGGGTCGAGTGTGGCTGCTTAAGTCCCCGGAGGGTGGGAAGGCGGTGGCAAGAGGGAGAAGGGAAAAGTGGGCGTTATTTAGGCTACCTAGGTAGGAAAGTCGGGAAGAGGGTCAGGGGGCACTGGGTCCCCAGCGTTGCAGCACCTGAGGAGCTGGTTGTTGTTGTTGTTTTTTGAGACAGAGTCTCGCTCTGTCGCCCAGGCTGGAGTACAGTGGCACGATCTCGGCTCACTGCAAGCTCCACCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCTCACCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGAGGTTTCACCGTGTTAGCCAGGATGGTCTCAGTCTCCTGACCTCGTGATCCGCCCGCCTTGACCTCCCACAGTGCTGGGGTACAGGCGTGAGCCACCACACCTGGCCACCTGAGGAGCTTTGAGAGCTCCTAGCACAGGTTGACCTCACACCAGGGAGCTGGGTGTGTGCAGTGGAGTGGCTTGGGTCGTTTTAAAGCTCCCCAGGGGAGCTTTAGTGAGCAGCACAGTGTGGGAGCAGGGGCCGAGGGGTGGAAGGAGAAGATTGCAAATGCAGACGCACGTCTGTGTCACTGCCCACCTTCAGCCACCTTCACACTTCCTAGTGCTGCCTGAGTCATGGTAGAATGACAAGCGTGGCTGCCCGATCTCACATGTGGCCATGCTCTGGAAAGACAGGTGAACAGGAAGGTTCCCTTTCAACGCTCTTCAGTAGACTTTATGCATTTGTGATGTCTGTTATTTCAG
Seq C2 exon
ATGACAGATTTGAAGATCTGGAAGAGGCAAATCCATTCTCTTTTAGAGAGTTTCTGAAGACCAAGAACCTCGGCCTCTCGAAAGAGGATCCGGCCAGCAGAATTTATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165689:ENST00000298537:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.323
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains