HsaINT1041216 @ hg38
Intron Retention
Gene
ENSG00000095539 | SEMA4G
Description
semaphorin 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr10:100977632-100978388:+
Coord C1 exon
chr10:100977632-100977730
Coord A exon
chr10:100977731-100978294
Coord C2 exon
chr10:100978295-100978388
Length
564 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
GCTGGTTCCTTGTTCCCTAGGAT
3' ss Score
8.55
Exon sequences
Seq C1 exon
ACGGAGTGCTTTAACCATGTGCGGTTCCTGCAGCGGCTCAATTCTACCCACCTCTATGCATGTGGGACTCACGCCTTCCAGCCCCTCTGTGCAGCCATT
Seq A exon
GTGAGTATACCTGTGTTGTGCCAGATCTCTGTTGACTTCATTAGGGATGGGATCATGTTCAAGATGCCAAAGAAGAGACTCAGAGCCAGTGAAGGAGACGGATGGTTTATTAAGGGGACTTCCATACAGGGCACTCCAGTGGCGGCGGGCTGCACTGGAGAACCATTCCCCTTTGTAAAAACCATGCAGTTTTTATAGCATTTTCACTTAGCATCCTCCCCCTAATCACCTCCACCTGGCAAACTTCATTTAACCCAAAACAAAGGGCCTTGATCCCCTGGACAGCATGTGTTCCACAGGATGGGCTAGGGGCTCAGATGTTCTTCATAGATAAGGAGTGAATCTCTAGGTTGGCCACTTGCAGATTTGGAACTCCAAACATACATTGTTTTGAGGCCATAAGGTCATTCTCAGGGGATGCTTAAGTTATTGCTGTCAGGTGCATCTGCCATACAACCTGCCCCTATCCCTGATCGCTGATCCCTGACCCCAGACTGATCTGACTTTGAGCCACTGTCCCTGCCTGTCTTCGGAACCACTTACTGCTGGTTCCTTGTTCCCTAG
Seq C2 exon
GATGCTGAGGCCTTCACCTTGCCAACCAGCTTCGAGGAGGGGAAGGAGAAGTGTCCTTATGACCCAGCCCGTGGCTTCACAGGCCTCATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539:ENST00000210633:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(27.8=100)
A:
NA
C2:
PF0140314=Sema=PD(20.9=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTTTAACCATGTGCGG
R:
CAATGATGAGGCCTGTGAAGC
Band lengths:
190-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains