RnoINT0132992 @ rn6
Intron Retention
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264745994-264746298:+
Coord C1 exon
chr1:264745994-264746092
Coord A exon
chr1:264746093-264746204
Coord C2 exon
chr1:264746205-264746298
Length
112 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
TTGGGACCCTTATTCTCCAGGAT
3' ss Score
6.55
Exon sequences
Seq C1 exon
ACGGAGTGTTTCAACCATGTGCGATTTCTACAGCGGCTCAATGCCTCCCACTTCTATGCATGTGGGACCCACGCCTTCCAGCCCCTCTGTGCAGCCATT
Seq A exon
GTGAGTATCCCTGCCCCTAGCCCTGACTCCTAACCCCAGACTGGCCTGACGTTGAGCTGCAGCCCTTGCCTGTCCTCAGGACCACTGACCCATTGGGACCCTTATTCTCCAG
Seq C2 exon
GATGCTGAGGCCTTCATCTTGCCTACTAGCTTCGAGGAGGGAAAGGAGAAATGTCCTTACGACCCAGCCCGTGGCTTCACGGGCCTTATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650:ENSRNOT00000019956:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.4=100)
A:
NA
C2:
PF0140314=Sema=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGTTTCAACCATGTGCG
R:
CAATGATAAGGCCCGTGAAGC
Band lengths:
191-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]