HsaINT1043431 @ hg38
Intron Retention
Gene
ENSG00000099994 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr22:24181259-24183267:+
Coord C1 exon
chr22:24181259-24181595
Coord A exon
chr22:24181596-24183056
Coord C2 exon
chr22:24183057-24183267
Length
1461 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
CTCAGCATCCTCTCCTCCAGATG
3' ss Score
8.1
Exon sequences
Seq C1 exon
CTCCTCACCCTCCCACAGGGTCCCAGGGCCGATCCAGGCCTGCGGGCCAGGAATGTGCTAACGGGGCAACTTGGGCCTTGCTGGTCCACGCAGGCACCTGTGGACTTTGAGAGGGGACTGGGTGGGGAGGGGCGGGGAGGGGCGGGGCGGGGCGGTGCCGCAGAGTGCAGGGCGGGCGGGGCCAGGCCAGCAGGGAGTGAGCTTGTCTGGCCGCCTCGCCTCGGAGCCACTGCACTGCTGGCTGCAGACACAGGCTGCACCATGAAGCCAGCCCTCCTGCCCTGGGCCCTGCTGCTGCTGGCGACAGCCCTCGGCCCGGGCCCCGGACCCACAGCAG
Seq A exon
GTATGCCTCCCTGCCCTTCTGTGTCCCCGTCTGTCTGTCCATCTGTCTGCAGCCAGGCCTGGGCTGACATCCCTCTGGGCTCAGCCTCTGTCCATCTGTCAGGCCATCTGTGGCTGTGCTAGGGGTGATGGGAAGAAATTCTGAGGGTCCATGTGGAGGGGCAGCCCATGGGGATGGGAGGTCTGAGCCGGGCCCACCCTAAACCTGCTGGTAGCTAGGAGGGAGGCGGGGGAGACCAGCAGAGGCCTCCGCCTGTGTCCCCAGCCCTGACAGGGCGGGATCACGGAGGGGGAGCCAGGATTGTGGGTCCTCATCAGGGTGGGGCTGAATCCAGGAAAGTCTAGGGAAAGCCCCGAACTCCAGAACCAGGACACTGGTCCCAGGCTGCCCCCCGTCCCCCACCCCATTTCCCATCGACCCTCTTGCCACTTATCTCACTTGCAAGCATCTCTCGGCCTCCTCCCCCGACCCCTGTGCGCCACCAAATCCTTGGCCAGTACATATTTATTGTTGCTTTTAAGTGCCAGGCACTGCACTTGGTGAAGTGGGGCCAGCGGGGTGGCTCAGGCCCAGGCCTGGCCCTCGACTGGCCTCTTTTGATGGGGGATGGGGAAGGGCCAGGGAAGTGCAATTCCAGCCTGGGTGCATGCACCTGCCCCAGTCCCTCCCTGCAACCCTTCCTTCATGCCAGCCCCTGGAAATATGGCCTTGCCCACCGGTCTTATGGCCCATAGGAGAAGTTTTGGGCCCGGCGCCCACAGCCCCTTGTGGTGTGCACCCCCACTTCCCTTTCCCCACTGCTGGGACCCCTGCTTGAAATGTCCCTCCTCTCCCCAGAAAGGAGGGGAGCGGCCCTGGCCTTCTGCCCTGAGCACGGAGCTCTCTTTGGGGTCTCAATTGCAGCCCCTGGGAGAGCGAGAAGTGTCACGTTCAGACCCTGCACCATTCCCTACCAGGCCTCAAATGAGACTCTTGGCAGCCATATCCCCCACCCCAGTCCAGGCAAGCAAGAGGGGTTCTTCTGCAGGCTTCAGGGCCCCCAGAAGGCGTGCTGACCACAGACACCCTGGGGAGCCAAGAGAGGTCGAGGGCTCCAGCTACCGTGGCCCACTGAGGACCCCTGCCTGTGGGATAGAGGACTTGGTGGCTGAAGGGCAGTCATGCCCAGGGGCTTCTCCTGACCCTGCAGGGCTGAGCGGATGCAGCTTTTTGCCTCTTCTCGCTGCATTCTAGCCCGTCAGTCAGGGCAACAGCCAGATGGTCTGTGCTAAGATTCATCCCATCCCCACGGGCCCTGTGGCTTTCTACTGTGTCCACCTGGTGGCCTGTGCAGTTCCTGGCCAGCGTTCTCCTGGGGATGCTGCTGTCTAATGGGCTGTGGGAGAAACAGAGACAGGCCCTGCACATGGGGCAGCCAGTCCAGTACCCGCCGGGCCAGGCCCTCAGCATCCTCTCCTCCAG
Seq C2 exon
ATGCCCAAGAGAGCTGCTCCATGCGCTGTGGCGCCCTGGACGGGCCATGTTCCTGCCACCCGACGTGCTCTGGCCTTGGCACCTGCTGCTTGGATTTCCGGGACTTCTGCCTGGAGATATTGCCCTACTCAGGATCCATGATGGGCGGCAAGGACTTTGTGGTGCGGCACTTCAAGATGTCCAGCCCCACAGACGCCAGTGTGATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099994:ENST00000358321:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0103312=Somatomedin_B=WD(100=56.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTTTGAGAGGGGACTGG
R:
CAGGCAGAAGTCCCGGAAATC
Band lengths:
350-1811
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains