MmuINT0155290 @ mm9
Intron Retention
Gene
ENSMUSG00000006342 | Susd2
Description
sushi domain containing 2 [Source:MGI Symbol;Acc:MGI:1918983]
Coordinates
chr10:75104178-75106753:-
Coord C1 exon
chr10:75106619-75106753
Coord A exon
chr10:75104346-75106618
Coord C2 exon
chr10:75104178-75104345
Length
2273 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
GGACTCGCCCCTCTGTCCAGCAC
3' ss Score
4.68
Exon sequences
Seq C1 exon
AAGAGCCTGCCCTGCAAATCTCTGAGCCACTGTGCTGCCTGCTGGTTGCAGACACAGGGCACACCATGAAGCTGGCCCTCCTGCCTTGGATTTTGATGCTGCTCTCAACAATACCAGGCCCCGGGTTCACAGCAG
Seq A exon
GTATGCCCCCACTTTGTCCTTCTGACCTCCCTGTTCATCTGCCTGATCAGCCAGGCCCTAAGCAGACACCCCTCTGGGCTCAGCTGTCTATCCATCTGGCAGTCCATCTGTGACTACACTGGGGAGTACTGGGAAGAAACTGGGGGGGTGGGGGGGGCTCCTGGATCTAGACACTTCTGGTGGAGATGGGAGGTCTGAACCAAGCTCATTCTGCACTCACATAAGGGCCTGGGAGGGAATCCCGGAAGACCAGAGCCTGCAGCCCAGCCTCTGTGAAGGGTGCAATCACACAGGGAACCCCCTGCCTCTCATCTGTCCCTGTGCTGGTCCTTCTCGGCGCAACCAAGAAAGTCTAGCAGGAAGGATGAGCCTAGAGCCATGGCCTTTCCCTGAGCTGAGCTGGGAGTTAACCAGCCTGCAGTCTCCTGCTTCACACAAGTGCCACCACCCTTCTGGTACTTTATCTCATGGCATCTTGAAGCATCTTCCCACACCCCTTGCAGTCGTTAAACCTTAGCCGATAAATATTTATTGCTGCTCCGGAGTATAAGCTTAGTGAGGTGGTCTAATGGCTTAGACCGCAGCCCGGCTCCTGGTGGATCTCCATCAAGGGTCTGGGGAAGGTGTGGTCTGGCCTGGGAATTTGTACCTCACCCCAGTCTCCACTTTTCAGCTCTGGGGCTGAAGTACAGCCCTACCACAGGTCTCCACAGCCCACAGAGGAAGTGGGCTGAACAGCTAGGCCTAGACAGGATGTTCCACAGTTTCTATGGGGTATTCCCAACTACACTGTGCTGCAACCCTCACTGGAATGTCCCCTCCTATCCCCTAAAAAGGGAGTGTCCTGGCTGCCTTCTCAGAGGGTGGGGCTCTCTGAGATTCAACTGTGTCCCACCCCCAGAAAGAGATGGGACAAGCTCAACCCAGATACCATTCCCTCCCCGGCCTTCAGTAGGACTCTTGGTGACTATGTACCCTATCAGAAAGCACGGGGACCCTTTTTTAGCTGTGAGGACCCACAAAGCCACTCCATTACCTGTGCTAAAATGGAGCCCCGCCCACAGAGCCGGTGGCTTTCCACCATGCCACTTGGTAGCCATAGCAATCCCTGGTCTGTCTCATGGACGCTTCTCACAGGCTCCAGGGGAAACGGGCCCTGTTGGTCAGGCAGCTGACCCTGGGACACGGGGCTTTCTTCTCCAGGTGCCCAGGGAAGCTGTTCCCTGCGCTGCGGGGCACAGGATGGACTCTGTTCCTGTCACCCAACCTGCTCGGGCCTTGGCACCTGTTGTGAAGATTTTCTGGACTACTGCCTAGAGATTTTACCCTCCTCAGGGTCCATGATGGGTGGCAAAGACTTCGTGGTGCAACATTTAAAGTGGACTGACCCTACTGATGGGGTCATTTGCAGGTGGGGGGTGGGGACCTAAACAGCTAGGTCATTAGGGCTCCTACACGCTCAATCCCAAGCATAGAGTGGGGGAGCTGGAGGTAGCACCCTGGGACCGAGGGCAGGCAGGAGAACACTGGCGCACCTAGCCTAACCCATTTCCATAGCTTTTGGCTCAGGCTGCCTCCACCCATCTCTGTCCCTCAGGTTTAAGGAGAGTATCCAAACCCTTGGCTATGTCGACGACTTCTATCAAGTGCACTGCATATCACCCTTGCTCTATGAAAGCGGCTATATTCCCTTCACCATATCAATGGACAATGGCCGCTCCTTCCCTCATGCAGGCACTTGGCTAGCTGGTGAGCTCTCACTCTTTCAAACCAGTCTAGGCTGTTAAATTAATAGACTCCACCCTCCCTGGGCCCTGGTTCCTATCTGCAACCCCAGGCCAGGGGACTTTCCCCAATGCTAATCCATGTGCGCTGATACTAGACCCAGTCTGCCTACCTGTCGCTCTGGCTGAACCAGTCCCTTGGGCGAGGGTTGCTGTCATTCATTACTCCACCACTGGCATCTAGACCAGAGTCCTGGCCCACAAGGAGTTGGAGCCATGGGGGTCTGATTCAGACCCAGCCCCCTGATGGTTCCTCAGCAAGGGCCTGGGGAGGGGCCAGATGAGAGGCGTGGTCTGGCCTGGGTCCTCAGTTCTGCAGGAAAGACCCTTTATCTTTCCCGGCCATGGTATCTTCCTCCCAAGGGACCCTGAGGGAGACCATCACCTGACTGCTGTCTGTCTGTCTCTTGGAGGTTCTCAGAACCCTCCAGGTCTCTTGTGCACCATTAAGTCTTCACTCATTCCTTACGGACTCGCCCCTCTGTCCAG
Seq C2 exon
CACATCCCTACAAAGTGTCTGAATCCGAGAAGAGCCAGCTGGTGAACGAGACCCATTGGCAATACTACGGCACTTCAGACACCAGGGGAAACCTCAACCTCACCTGGGACACTTCAGCGCTGCCCACGCCGGCCGTCACCATTGAGCTGTGGGGCTATGAGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006342-Susd2:NM_001162913:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: