MmuEX0045804 @ mm9
Exon Skipping
Gene
ENSMUSG00000006342 | Susd2
Description
sushi domain containing 2 [Source:MGI Symbol;Acc:MGI:1918983]
Coordinates
chr10:75104178-75106753:-
Coord C1 exon
chr10:75106619-75106753
Coord A exon
chr10:75105208-75105415
Coord C2 exon
chr10:75104178-75104345
Length
208 bp
Sequences
Splice sites
3' ss Seq
CACGGGGCTTTCTTCTCCAGGTG
3' ss Score
10.99
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
AAGAGCCTGCCCTGCAAATCTCTGAGCCACTGTGCTGCCTGCTGGTTGCAGACACAGGGCACACCATGAAGCTGGCCCTCCTGCCTTGGATTTTGATGCTGCTCTCAACAATACCAGGCCCCGGGTTCACAGCAG
Seq A exon
GTGCCCAGGGAAGCTGTTCCCTGCGCTGCGGGGCACAGGATGGACTCTGTTCCTGTCACCCAACCTGCTCGGGCCTTGGCACCTGTTGTGAAGATTTTCTGGACTACTGCCTAGAGATTTTACCCTCCTCAGGGTCCATGATGGGTGGCAAAGACTTCGTGGTGCAACATTTAAAGTGGACTGACCCTACTGATGGGGTCATTTGCAG
Seq C2 exon
CACATCCCTACAAAGTGTCTGAATCCGAGAAGAGCCAGCTGGTGAACGAGACCCATTGGCAATACTACGGCACTTCAGACACCAGGGGAAACCTCAACCTCACCTGGGACACTTCAGCGCTGCCCACGCCGGCCGTCACCATTGAGCTGTGGGGCTATGAGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006342_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0103312=Somatomedin_B=WD(100=58.6)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCCTGCAAATCTCTGAG
R:
TGTCTCCTCATAGCCCCACAG
Band lengths:
297-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types