GgaEX6014042 @ galGal3
Exon Skipping
Gene
ENSGALG00000005824 | SUSD2
Description
NA
Coordinates
chr15:8083145-8086568:-
Coord C1 exon
chr15:8086470-8086568
Coord A exon
chr15:8084641-8084842
Coord C2 exon
chr15:8083145-8083296
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTGATGTGTTCTCTAACAAGGAG
3' ss Score
6.48
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CAGTCAGCTGCCCTGAATCACCCGAACAAAACATGGAGTGTGTTGGTGCAGGTGTTCCTTTATTCATCCTCTTCTCCCTCGCTGCCCTTTGGAATACAG
Seq A exon
GAGCTCAAGACTCCTGCTCAAGCCAGTGTGGGAAGCTGCTTGGTGCCTGTTCATGCCAGGAGATCTGCCAGTCCTTGGGGACCTGCTGTCCTGATTACAATGAATTTTGTCTCCACATTTCTCCATACTCAGGATCTCTGATGGGAGGCAAAGATTTTTTGATAGAGAATACAGCATTTAATACTTCTGTGTTAATGTGCAG
Seq C2 exon
ATTCAAGCAGCAAGTCATAACCAGTGGCTATGTTGATAAGGATGGAAAAGCCCACTGCCTCTCCCCATTGCTGTATGAAACTGGTTTCATCCCCTTTGAAGTTTCTACAGATGGCGGGCTGACATTTCCCTACTCTGGAACTTGGTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005824-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0103312=Somatomedin_B=WD(100=60.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCTGAATCACCCGAAC
R:
CTGACAACCAAGTTCCAGAGTAGG
Band lengths:
244-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]