DreEX0008521 @ danRer10
Exon Skipping
Gene
ENSDARG00000101452 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr5:15881082-15885583:+
Coord C1 exon
chr5:15881082-15881342
Coord A exon
chr5:15881446-15881644
Coord C2 exon
chr5:15885435-15885583
Length
199 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGTTCGTTCCTCAAGCGC
3' ss Score
7.33
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCATGCGTTTCATTTATGGCATCTTGTCTGCAAGCTGTCAAACAGTTACAAGGTACGTTTAGACCACAGAGAGAGAGAGACCTTTGTCACAATGTCATGACTGAGAACCACTCATATACTATATACTGTGTTTGCATACGACGCAATAAGACGATGTTTAAACCATCTCAATCCAGAAACAGTGCTGTGCAAATATGAGAATTAAAATGCATCTGTGTACGTTCATTGTGCTGTTTCTTCAGCTTCTATCCTGGACTGCTG
Seq A exon
CGCGGTCTTGTGCCAGACACTGTGGAGAGAAGTTGAACACATGCTCCTGTCACGCTACATGTGAATCTCTGAAGGACTGCTGTGCTGATTATAGACACTTTTGCCTTGACATTGAGCCTCACTCCGGGTCTTTGCTGGGAGGCACAGACTTTAAAATCCTTAATGCTACATTTGAACCGAACATTACCCTCACTTGCAG
Seq C2 exon
GTTCAGCTCAGAGATCTTGACGGAGGGTTATGTGGACGAGAGCGGTGCGGGTCACTGTATTTCTCCTCTGCTCTATGAGTCCGGATGGATCCCGTTTGAAGTGTCCACTGATGGGCTGAATTATGACCGATCGGGGAAGTGGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101452_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103312=Somatomedin_B=PU(2.4=4.3)
A:
PF0103312=Somatomedin_B=PD(95.1=58.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTTTGCATACGACGCA
R:
CAGTGGACACTTCAAACGGGA
Band lengths:
247-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]