RnoEX0087769 @ rn6
Exon Skipping
Gene
ENSRNOG00000033389 | Susd2
Description
sushi domain containing 2 [Source:RGD Symbol;Acc:1308595]
Coordinates
chr20:13965121-13967011:+
Coord C1 exon
chr20:13965121-13965266
Coord A exon
chr20:13966453-13966660
Coord C2 exon
chr20:13966860-13967011
Length
208 bp
Sequences
Splice sites
3' ss Seq
CACCGGGCTTTCTTTTCCAGGTA
3' ss Score
11.53
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GGCCCGCAGGGAGAAAGCCTGTCCGGCAATCTCTGAGCCACTGTGCTGCCCGCTGGTTGCAAACGCAGGGCACATCATGAAGCTGGCTGTGCTGCCCTGGATTTTGATGCTGCTCTCGACAATCCCAGGCCCCGGGCTTACAGCAG
Seq A exon
GTACCCCGGGGAGCTGCTCCCTGCGCTGTGGGGTACAGGATGAAATCTGTTCCTGTCATCCAACCTGCTCAGGCCTTGGCACCTGTTGTAAAGACTTTCTGAACTACTGTCTAGAGATTTCACCCTCCTCGGGCTCCATGATGGGCGGTAAAGACTTCGTGGTGCAACATTTAAAGTGGACTGATTCTATTACCAGTGTCATTTGCAG
Seq C2 exon
GTTTAAGGAGAGTATCCAGACCCTTGGCTATGTGGACGACTTGAAGCAAGTGCACTGTATATCACCCTTGCTCTACGAAAGCGGCCATATTCCCTTCACCATCTCAATGGACAATGGCCTCTCCTTTCCCCACGCAGGCACTTGGCTAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033389_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0103312=Somatomedin_B=WD(100=58.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGGAGAAAGCCTGTC
R:
CAGCTAGCCAAGTGCCTGC
Band lengths:
294-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]