HsaEX6026057 @ hg19
Exon Skipping
Gene
ENSG00000099994 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:30667]
Coordinates
chr22:24577227-24579614:+
Coord C1 exon
chr22:24577227-24577563
Coord A exon
chr22:24579025-24579235
Coord C2 exon
chr22:24579463-24579614
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTCAGCATCCTCTCCTCCAGATG
3' ss Score
8.1
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
Exon sequences
Seq C1 exon
CTCCTCACCCTCCCACAGGGTCCCAGGGCCGATCCAGGCCTGCGGGCCAGGAATGTGCTAACGGGGCAACTTGGGCCTTGCTGGTCCACGCAGGCACCTGTGGACTTTGAGAGGGGACTGGGTGGGGAGGGGCGGGGAGGGGCGGGGCGGGGCGGTGCCGCAGAGTGCAGGGCGGGCGGGGCCAGGCCAGCAGGGAGTGAGCTTGTCTGGCCGCCTCGCCTCGGAGCCACTGCACTGCTGGCTGCAGACACAGGCTGCACCATGAAGCCAGCCCTCCTGCCCTGGGCCCTGCTGCTGCTGGCGACAGCCCTCGGCCCGGGCCCCGGACCCACAGCAG
Seq A exon
ATGCCCAAGAGAGCTGCTCCATGCGCTGTGGCGCCCTGGACGGGCCATGTTCCTGCCACCCGACGTGCTCTGGCCTTGGCACCTGCTGCTTGGATTTCCGGGACTTCTGCCTGGAGATATTGCCCTACTCAGGATCCATGATGGGCGGCAAGGACTTTGTGGTGCGGCACTTCAAGATGTCCAGCCCCACAGACGCCAGTGTGATCTGCAG
Seq C2 exon
GTTTAAGGACAGCATCCAGACCCTCGGCCATGTGGACTCCTCCGGGCAAGTGCACTGTGTGTCACCTCTGCTCTATGAGAGCGGCCGCATCCCCTTCACTGTGTCACTGGACAACGGCCACTCCTTCCCTCGTGCGGGCACCTGGCTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099994-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0103312=Somatomedin_B=WD(100=56.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTTTGAGAGGGGACTGG
R:
AGGTGACACACAGTGCACTTG
Band lengths:
304-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)