GgaEX6014042 @ galGal4
Exon Skipping
Gene
ENSGALG00000005824 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr15:7842238-7845797:-
Coord C1 exon
chr15:7845734-7845797
Coord A exon
chr15:7843734-7843935
Coord C2 exon
chr15:7842238-7842389
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTGATGTGTTCTCTAACAAGGAG
3' ss Score
6.48
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGACCTCTGAAAAGGAGCAGTTCCTTGGTTTTGCATCAGTGGTTTACAACAAACCTTTGGACA
Seq A exon
GAGCTCAAGACTCCTGCTCAAGCCAGTGTGGGAAGCTGCTTGGTGCCTGTTCATGCCAGGAGATCTGCCAGTCCTTGGGGACCTGCTGTCCTGATTACAATGAATTTTGTCTCCACATTTCTCCATACTCAGGATCTCTGATGGGAGGCAAAGATTTTTTGATAGAGAATACAGCATTTAATACTTCTGTGTTAATGTGCAG
Seq C2 exon
ATTCAAGCAGCAAGTCATAACCAGTGGCTATGTTGATAAGGATGGAAAAGCCCACTGCCTCTCCCCATTGCTGTATGAAACTGGTTTCATCCCCTTTGAAGTTTCTACAGATGGCGGGCTGACATTTCCCTACTCTGGAACTTGGTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005824-'0-2,'0-0,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0103312=Somatomedin_B=WD(100=60.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCTGAAAAGGAGCAGT
R:
ACAACCAAGTTCCAGAGTAGGGA
Band lengths:
212-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]