BtaEX6074075 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006730 | SUSD2
Description
Bos taurus sushi domain containing 2 (SUSD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205675]
Coordinates
chr17:73408384-73410684:+
Coord C1 exon
chr17:73408384-73408459
Coord A exon
chr17:73410154-73410361
Coord C2 exon
chr17:73410533-73410684
Length
208 bp
Sequences
Splice sites
3' ss Seq
CTCCACGCCCTCCACTCCAGGTG
3' ss Score
8.05
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
ATGAAGCCGACCCTGTTGCCCTGGGCCCTGCTGCTGCTGGCGACTGTCCCCGGCCCGGACCTCTGGCCTGCTGCAG
Seq A exon
GTGCCCAGCTGAGCTGCTCCCAGCGCTGCGGAGACCAGAGCGGGCCATGTTCCTGCCACCCGACCTGCTTTGGCCTGGCCAGCTGCTGCGTGGACATCCGGGATTTCTGCCTGGAGATCTCGCCCTACTCTGGCTCCATGATGGGGGGCAAGGACTTTGTGGTCCGGCATCTCAACTGGCCCAACCCCGCTGACAGCGTGATCTGCAG
Seq C2 exon
CTTCAAGGAGAGCATCCAGACCCACGGCTACGTGGACGCCTCTGGCCGAGTGCACTGCGTGTCGCCCCTGCTCTACGAGTCCGGCCGCATCCCGTTCACGCTCTCCATGAACAACGGCCGCTCCTTCCCGCGCTCGGGCACCTGGCTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006730-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0103312=Somatomedin_B=WD(100=58.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGCCGACCCTGTTGC
R:
CAGAGAGCCAGGTGCCCG
Band lengths:
228-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]