DreINT0020447 @ danRer10
Intron Retention
Gene
ENSDARG00000101452 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr5:15885435-15887888:+
Coord C1 exon
chr5:15885435-15885583
Coord A exon
chr5:15885584-15887720
Coord C2 exon
chr5:15887721-15887888
Length
2137 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTGATTGTGTGATTGTGCAGTTC
3' ss Score
6.05
Exon sequences
Seq C1 exon
GTTCAGCTCAGAGATCTTGACGGAGGGTTATGTGGACGAGAGCGGTGCGGGTCACTGTATTTCTCCTCTGCTCTATGAGTCCGGATGGATCCCGTTTGAAGTGTCCACTGATGGGCTGAATTATGACCGATCGGGGAAGTGGCTCTCAG
Seq A exon
GTGAGATGTGAAGTTTATGGAAATGCCCATCAAAAGTCACTCACTCACTACTTTTCTAATAAACCCCATCGTGATATCAACACACCATCACTAATGTCATTTAGTGCCTCTAATACAGGGGTGTCCAAACTCGGTCCTGGAGGGCCGGTGTCCTGAAGAGTTTAGCTCCAACCCTAATCAAACACAACTGAACCAGCTAATCAAGCCCTTTCTAGGTATACTAGGCTGCGCCCGAAACGCATACTTTCATACTATACAGTACACTAAAATCAGTATGTGAGCCGAGTAGTATGTCCGATTACATAGAAGTCGAAAATCAGTATGCGAGAAGTACCTGGATGACTTGCTACTTCGGTCGAGACTCTGAAGTGTGCATCCCATGCACGCTACGCTATCCCATGATGCCCTGCGAGAGAATTCATGAATGGGAGTGAATTGACGCAACTGACGCAGGTAGGTCATGTGACCATGACAAAATGGCCGATGTAGTATGTCCGAATTCCATTCATATTTTTCACATTCATACTGTATAGAACATACTTTTCTGATGGCTGATTAGTATGTTTAAATTCAAATGCAGTACCTACTGAGTAGTAGGTGGTTTCGGACGCAGCCCTCGAAACTTCCTGGCAGGTGTGTTGAAGCAAGTTGGAGCTAAACTGTGCAGGACACTGGTTCTCCGGGACCGAGTTTGGGCTTTCTCTAATACCTGTGCGGCATCCATAAATTGCCCTTGACTTTGACTAAAACTGGTTAACCCTGTGTTAAAGGCATTGGCTAGCAACATATCAGTAGACTTGCTGGTGCTAATAGGTGATAAAAGAATAGTTCACCTAAAATTGAAAATTCTGTCGTAATTTACTCATCCTTCTCTTGTTCCAAACCAGTTTGGTTTTCTTGTTTTCTGTTAAAGGATGCTTTCACACCTGTGAATCGATTCAGCTGTTCCGAAACGGGGATTAAAATTGTTACAATGTTTGCTCTTTGCTCTTGGAGCGGTTCGCTTTCACACGGCAAAGTTTCTAAACGGATCAAATAAGCTAAAACAAGTCACGTGCGAGTAAACTCTCCTCACATTGGTCAGTTTCACGGTTTATTTTGCAGAGTCCCACTCAGCTGTCAGGGGCATGGTAGCCAATCAATGGTGTTTGACAGGGTGCGCGCGCGCGACGTGTCTGAAGAGCGAGAACGGGATGCGGTGGGGAGGGGTGAGAAGGGAGCGCGACGTGATGCCTATTTGAAGACCGGGAGGGAGACGCGCGATTTCCGGGAGATCATCACTCGTTTGCGGGCACCCGGGAGTCTCTGTGCATTTGCTGGAGACTAACGAAACTTCCGGGAGACTTGGGATGTCTGTTGAATGACCTCCCGCCCTGCTCATAATTCTCTATTCATATAGCCGTATGCCTATTACATATCCATAATACACTGTGGTATAACTGGGCTCGGATTGTATTGCTTTTTTCACTACAATCGATCTGCTCCAGATTTCGTTTTAATCGAGCCGAGACCACCTCATTCAAGGGATCTCGGAGCTATTGTTTTGGATCCGAGCGTGATTGGTGGTTTCACATATGCAAAACTAACCGCACCAACTGGGCAAACGAGAAGGGTTTCGAAACAAAAGTCTAGTGTGAAAGCACCAGAAGACAAAGGAAGAAATTCTGTTAAGGAAAAAAAAAACAGCCACCACTTGAATGTGAGTAAATGATGAATTATTTTTTTGGGGTGAACTAACAATTTAATTCCCCAAATTAACTCTGTAAAAAGTCAAAGTCTTTTTATACTGAAGTACTTGGATATTTTATTAAAAATCTATTATGTGCATTTGATAAATCAATCATAGGTTAATCTCCCCTGTGGCTGTTGTAGAGTTCATGCATATTCATTATGGTGAATGATTCACCAGTGCAAGTTATTCTGGAAAACAAATAATAATTGGAAGTGCTGTGACATTCCTTTCTAGAACATGACTTTAGTGTTGATGCTGGCTGATATGGTTTATTATGATTGTATGTTTTACTGCATGATGTGATGATTAGATCCATTAGTCATAGGGCTTTACCTCGTGTTCACTGTACTGTACTGTACTGTATATGTGTTAGTGGTGAGGTTGACTGATTGTGTGATTGTGCAG
Seq C2 exon
TTCATCACAGTAAACTGGGTCCTGCCTATAAGATCATTCTGGGTAACGCCACTCAGTGGCAGTATTACGGCACTCCAGGAGTCGGCGGAGATCTGAAGATGACATGGATTTCATCTCTAATAAAAGCAGAGAGAGTCAATGTTGAGCTGTGGGGTTACAGTGAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101452:ENSDART00000168643:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]