MmuINT0155304 @ mm9

Intron Retention

Gene

ENSMUSG00000006342 | Susd2

Description

sushi domain containing 2 [Source:MGI Symbol;Acc:MGI:1918983]

Coordinates

chr10:75104178-75105021:-

Coord C1 exon

chr10:75104870-75105021

Coord A exon

chr10:75104346-75104869

Coord C2 exon

chr10:75104178-75104345

Length

524 bp

Sequences

Splice sites

5' ss Seq

CTGGTGAGC

5' ss Score

8.05

3' ss Seq

GGACTCGCCCCTCTGTCCAGCAC

3' ss Score

4.68

Exon sequences

Seq C1 exon

GTTTAAGGAGAGTATCCAAACCCTTGGCTATGTCGACGACTTCTATCAAGTGCACTGCATATCACCCTTGCTCTATGAAAGCGGCTATATTCCCTTCACCATATCAATGGACAATGGCCGCTCCTTCCCTCATGCAGGCACTTGGCTAGCTG

Seq A exon

GTGAGCTCTCACTCTTTCAAACCAGTCTAGGCTGTTAAATTAATAGACTCCACCCTCCCTGGGCCCTGGTTCCTATCTGCAACCCCAGGCCAGGGGACTTTCCCCAATGCTAATCCATGTGCGCTGATACTAGACCCAGTCTGCCTACCTGTCGCTCTGGCTGAACCAGTCCCTTGGGCGAGGGTTGCTGTCATTCATTACTCCACCACTGGCATCTAGACCAGAGTCCTGGCCCACAAGGAGTTGGAGCCATGGGGGTCTGATTCAGACCCAGCCCCCTGATGGTTCCTCAGCAAGGGCCTGGGGAGGGGCCAGATGAGAGGCGTGGTCTGGCCTGGGTCCTCAGTTCTGCAGGAAAGACCCTTTATCTTTCCCGGCCATGGTATCTTCCTCCCAAGGGACCCTGAGGGAGACCATCACCTGACTGCTGTCTGTCTGTCTCTTGGAGGTTCTCAGAACCCTCCAGGTCTCTTGTGCACCATTAAGTCTTCACTCATTCCTTACGGACTCGCCCCTCTGTCCAG

Seq C2 exon

CACATCCCTACAAAGTGTCTGAATCCGAGAAGAGCCAGCTGGTGAACGAGACCCATTGGCAATACTACGGCACTTCAGACACCAGGGGAAACCTCAACCTCACCTGGGACACTTCAGCGCTGCCCACGCCGGCCGTCACCATTGAGCTGTGGGGCTATGAGGAGACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000006342-Susd2:NM_027890:3

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features