GgaINT0005587 @ galGal3
Intron Retention
Gene
ENSGALG00000005824 | SUSD2
Description
NA
Coordinates
chr15:8082470-8083296:-
Coord C1 exon
chr15:8083145-8083296
Coord A exon
chr15:8082638-8083144
Coord C2 exon
chr15:8082470-8082637
Length
507 bp
Sequences
Splice sites
5' ss Seq
CAGGTTACT
5' ss Score
0.49
3' ss Seq
TGGTTTTTCTTGTAATGCAGTAC
3' ss Score
4.76
Exon sequences
Seq C1 exon
ATTCAAGCAGCAAGTCATAACCAGTGGCTATGTTGATAAGGATGGAAAAGCCCACTGCCTCTCCCCATTGCTGTATGAAACTGGTTTCATCCCCTTTGAAGTTTCTACAGATGGCGGGCTGACATTTCCCTACTCTGGAACTTGGTTGTCAG
Seq A exon
GTTACTGACTTCAGTCTGTGATATCACTCTCCTTTCTGTACTCTTGCTTCACAAAAACAAGATGATAAAAGCATTTCCCACCTTCTTAATGGGCCATTTGGCCTCAAAAGAGTCATTCTTGATCCCTTCGTGGTAATTCCTATTTTGAGAGATGAAGTTTTGCTGTGAATGAGTTCTGCCATTATTCAGCAGCAACATTAAATCACAGAAATTCTTACTCAAAAGTGAGGTTGACCAAAAGAGTTCCCTTTTTGGTAGGTATTTATATTGGAGAAGAGCTGTATCTTGCTGTTGTGTCCCCAGGACCACAGCATTACTAGAGGTTGTATTCTCTCATCTCCAATTTACTCTTTTTTTTAAATCATGCATCCTGTTAGAAAACACACAGAGGAAATACTGCTAAAGCTTACATACTATAATTGCAACTTTTCATTGCTATGCAAGACAAAAATTGTAATTATTATTTTGTCATCAAATTTGACATTTTTGGTTTTTCTTGTAATGCAG
Seq C2 exon
TACATCACAGCAAGGTTTCGGGTGGAGAAAAATGCACGTTGGTCAATGAGACCAAATGGCAGTACTATGGCACTCCTGGCACGGGTGGGAACTTAACTCTGACCTGGACACACCAGGCACTTGCAGCATCCCATATCAACATAGAAGTCTGGGGGTACCAGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005824:ENSGALT00000009356:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCAGCAAGTCATAACCAGT
R:
CTGTTTCCTGGTACCCCCA
Band lengths:
318-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]