RnoINT0146223 @ rn6
Intron Retention
Gene
ENSRNOG00000033389 | Susd2
Description
sushi domain containing 2 [Source:RGD Symbol;Acc:1308595]
Coordinates
chr20:13966860-13967709:+
Coord C1 exon
chr20:13966860-13967011
Coord A exon
chr20:13967012-13967541
Coord C2 exon
chr20:13967542-13967709
Length
530 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
ATGGGCTCCCCTCTCTGCAGCTC
3' ss Score
9.21
Exon sequences
Seq C1 exon
GTTTAAGGAGAGTATCCAGACCCTTGGCTATGTGGACGACTTGAAGCAAGTGCACTGTATATCACCCTTGCTCTACGAAAGCGGCCATATTCCCTTCACCATCTCAATGGACAATGGCCTCTCCTTTCCCCACGCAGGCACTTGGCTAGCTG
Seq A exon
GTGAGCCCTCGCTCTGTCAAGCCAGTCTAGGCTGTTAAGTTCGTAGACTCCGCCCTCCCTGGGCCCTGGTTCCCATCCGCAACCCAAGGCCACGGGACTTTCCCCAACACTAATCCATGCACACTGATACTAGACCCAGTCTGCCTACCCGTCCCTCTGGCTGAACCAGTCCCTTGGGCAAGGGTTGCTGTCACCCATCTCTCCACTCTCTGGCATCTAGAACAGAGCCCCAGCCCATGAGGAGTTGGAGCCATGGAGGGTCCTCAGAAGGCTGGTCCAAACCCAGCCCCCTGATGGTCCCTTAGCAAGGGCCTGGGGAAGGGCCAGATGAGAGACGTGATCTAGCCTGGGTCCTCAGTTCTGCAAGCCTCATCTCTCCTGGTTATGGTATCTTCCTGCCAGGAGATCGTGAGGAAGACCATCACCTAGCTGCTGTTAGTGTTTATCTCTTGGAGGCTCTTCAGAACCCTCCGGGTCTCTTGTGTACCATTAAGCCTTCACTCATCCCTTATGGGCTCCCCTCTCTGCAG
Seq C2 exon
CTCACCCCTACAAAGTCTCTGAGTCTGAGAAGAGCCAGCTAGTAAACGAGACCCATTGGCAATACTATGGTACTTCAGACACCGGGGGAAACCTCAGCCTCACCTGGAATACCTCAGCGCTGCCCACGCGGACCGTCACCATTGAGCTGTGGGGCTATGAGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033389:ENSRNOT00000066773:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTATCCAGACCCTTGGCT
R:
TGTCTCCTCATAGCCCCACAG
Band lengths:
311-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]