HsaINT1044731 @ hg38
Intron Retention
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2401975-2403195:+
Coord C1 exon
chr19:2401975-2402016
Coord A exon
chr19:2402017-2403081
Coord C2 exon
chr19:2403082-2403195
Length
1065 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CGGTTCTTTTCTGTCCTCAGGCC
3' ss Score
11.27
Exon sequences
Seq C1 exon
GGAGACATAAGGGACCCTTGGCAGAAAGAGACTTCAAATCAG
Seq A exon
GTATGTTTTTCTCTCTGGCCTTTTCTCTGATTGCAGTTACTGACAGAGGTTTCCTAAGACTCATTTCAAGGAAGTGAAGGAATCCCTGGAACGAGGCTGGGCGCGGTGGCTCACATCTGTCGTCCCAGCACTTCAGGAGGCTGAGGCAGGAGGATCACTTGAGGCCAGGAGTTTGAGACCAGGCTGGACAACAGAGCGAGACCCTATCTCTACAAAAATAATAATAAAAAAAGGCCAAAAATAATTTTTAAAATTATTATAAAAAATAATAAAAATTAGCCGGGCATAGTGGCGTATTGCCTGTACTCTCAGCTACTTGGGAGGCTGAGGAAGGAGGATCGCTTGAACCCAGGAGGCAGAGGCTGCGGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGTGAAACTGTGTCTCAAAAAATAATACATAAGGCCGGGCGCACTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCATCTCACTAAAAATACAAAATTAGCCAGGCGTGGTGGGGCGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCATGAGAATCACTTCAACCAGGGAGGCGGAGGTTGCGGTGAGCCGCGATTGTGCCATTGCACTCCAGGCTGGGCAACAAGAGTGAAACTCTGTCTCAAAAAAATAAATAAATAAAATAAAATAAAAATAAATAAAATAAATAGCCTGGGTTGGTGGTGTGCACCTGTGGTCCCAACTACTCAGGAGGCTGAGGCAGGAGGATTGCTTGAACCTGGAGTTAGAGGCTGCGGTGAGCTGTGATTGCACCACTGCACTCCCGTTTGGGTAACAGAGCTAGACCCTGTCTCAAAAACAAAAATAAAAACAAGGAAAAGGAAAGAAAAGGAGAGAGAGAGTTTCCACATTTCCGTACCCTGGTGGTACTAAGTATAGCATGGTGCCTTACTCCAACCAGGAGATGTAGCATGAGGTCAGAAAGTCGGTTCTTTTCTGTCCTCAG
Seq C2 exon
GCCGCTGTCCAGGGAACTCCTTTTCCTGCGGGAACAGCCAGTGTGTGACCAAGGTGAACCCGGAGTGTGACGACCAGGAGGACTGCTCCGATGGGTCCGACGAGGCGCACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297:ENST00000332578:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains