BtaINT0150505 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22476830-22480949:-
Coord C1 exon
chr7:22480908-22480949
Coord A exon
chr7:22476944-22480907
Coord C2 exon
chr7:22476830-22476943
Length
3964 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGGTTCTTGTCTGCCCTCAGGCC
3' ss Score
10.32
Exon sequences
Seq C1 exon
GAAGCCAGAAGGGGCCGCTGACAGAAAGAGACTTAAAATCAG
Seq A exon
GTATGTTTTGATGAAATGATAAAGAAAATGTGGTGTTTACACCACACATGTACACATATACACAATGGAATACTACTCAGCCATAAAAAAGAATGAAATAATGCCATTTGCAGCAACCTGGATGGACCTAGAGATTCTCATACTAGAAGTAAGTCAGGCAGAGAAAGACAAATACCATATGATATCACTTATATGTGGAATTTAAAAGATGTTACAACAAACTTATCTACAGAACAGACTCAGAATATTGAGAACAGATCTGGGCTTGCCAAGATGGAGGAGGGTCAGGGAGGGAAGGATTATGGGTTTGGGATTAGCAGATGCAAACTGTTGTATATAGGATGGATAAACAGTGAAGTCCTGTATAGCACAGGGAACTATTAATATATTCAATGTCCTGAGACAAAACCTAATGGAAAAGAATATGAAAAAGAACATATACACGTGTAACTGAATCACTTTGCTACACAGCAGAATTGAACACGTTGTAAATCAACTATTGCTGTTGTTCAGTCGCTCAGTTGTGTCTGACTCTTTGCGCCCCCATGGACAGCAGCACGCCAGGCTTCCCTGTCCACTATCTCCAGGAGTTTGCTCAAATTCATGTCCATTGAGCCATCCAACCATCTCATCCTCTGTCATCCCCTTCTCCTCCAGCCTTCAATCTTTCCCAACATTATGATCTTTTCCAGTGAGTCGACTCTCTGCATCAGTTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCCTTTCAATGAGTATTCAGGGTTGATTTCCTTTAGGATTGATGGGTTGGATCTTCTAAATGTCCAAGTGATTCTCAAAAGTCCTCCAGCACCACAGTTTGAAGGCATCAGTTCTTCAGCGCTCAGCCTTTTTTATTTTCCAGTTCTCACATCTATTCATGACTACTGGAAAATCCATAGCTTTGACTATATGGACCTTTGTAGGCAAAGCAATGTCTCTGCTTTTTAATACGTTGTCTAGGTTGGTCATCGCTTTTCTTCCAAGGAACAACCGTCTTTTAATTTCATGGCTGCAGTCACCATCTACAGTGATTTTGGAGCCCAAGAAAATAGAATCTGTCACTGCTTCTATTGTTTCCCCATCTATTTGCCATGAAGTGATGGAACTGGATGCCATGATCTTTGTTTTTTGAATGTTGAGTTATAAGCCAGCTTTTTCACTCTCCTCTTTCACCTTCATCAAGAAGCTGTTTAATTCCTCTTCACTTTCTGCCATTAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCAACAGTCTTGATTCCAGCTTGTGATTCATCTAGCCCGACATTTTACAAGATGTACTCTACATGTAAATTAAATAAGCAGAGTGACAATATACAGCCTTGACATACTCCTTGCCCAATTTTGAACCAGTCTGTTGTTCCATGTCCAGTTCTACCTGTTGCTTCTTGACCTGCATACAGGTTTCTCAGGAGGCAGGTAAAGTGTTCTGGTATTCCCATCTGTTTAAGAAATTTCCACAGTTTTTTTGTGATCTACACAGCCACAGGCTTTAGCATAGTCAATGAAGCAGAAGTAGATATTTTTCTGGAATTCTCTAGTTTTTTCTATGACCCAGTGGATGTTGACAATTTGATCTTTGGGTTCTCTGCCTTTTCTAAATCCAGTTTGAACATCTGGAAGTTCACAGTTCACATACTGTTGAAGCCTAGCTAGGAGGATTTTGAATATTACTTTGCTAGCATGTGAAATGAGTGCAATTGTGCCATAGTTTGAACATTCTTCTTTGAGATTGGGATAAAAACTGCCCTTTTCCAGTCTTTCAGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTAACAGCAGCATCTTTTAGGATTTGAAATAGCTCAGCTGGAATTCCATCACCTCCACTAGCTTTGATTGTAGTGATGCTTCCTTAGGCCCACTTGACTTCACACTCTGGGATGCTCTAGGTAAGTGACCACACAATTGTGGTTATCCAGGTCATTAAGATCTTTTGTGTATAGTTTTTCTGTGTTCTTGCCACCTCTTCTTAATATCTTCTGCTTCTGTTAGGTCCATACTGTTTCTGTCCTTTATTGTGCCCATCTTTGCATGAAATGTTCCCTTGGTATCTCTAATTTTCCTGAAGAGATCTCTAGTCTTTTCCATTCTATTGTTTTCCTCTGTTTCTTTGCATTGTTCACTCACAAAAGCTTTCTTATCGCCCCTTACTATTCTCTGGAAGTCTGCATTTAAATGGGTATATCTTTCCCTTTGTCCTTTGCTTTTCGCTTGTCTTCTCTTCTCATCTATTTGTAAGTCCTCCTCAGACAACCATTTTGCCTTTTTGGATTTCTTTTTCTTGGAGATGGTTTTGATCATCACCTCCTGTACAATGTTACGAACCTCCATCCATAGTTCTTCAGGCACTCTATCAGATCTAATCCCTTGAATCTATTTGTCACTTCCACTGTATAATCATAAGGGATTTGATTTAGGTCATACCTGAATGACCCAGTGGTTTTCCCTACTTTCTTCAATTTAAGTCTGAATTTTGCAATAAGGAGTTCCTGATCTCAGCCACAGTCAGCTCCTGGTCTCTGTTTTTTGTTTGTTTGTTTTTGCTGACTATATAGAGCTTCTCCATCTTTGGCTGCAAAGAATATAATCAATCTGATTTCAGTATTGACCATCTGGTGATGTCCATGTGTGGAATCATCTCTTGTGTTGTTGGAAGAGGTGTTCACTGTGATCAGTGCATTCTCTTGGCAAAACTCTGTTAGCCTTTGTCCTGCTTATAAATCAACTGTACTTCAATTTTAAAAAATCAAGTATGTTTTTTCAGCCCCTTGCCCTCTGCCCAATTTTCTCTGTTTGCAAACACCAAGAGAGGTTTCCTGAAGCTTCTTTAAGGCACACAAAGGAAATCCCTCAAACACAGTAAATGCTAGTTCTGTGCACTAGCCTTTTATGGGGAAGATGGAGTCATGGTCCTGTGTGAGCAAAGGATTTTAAAAAATGAGGCACTTTTAATTGTTCAGAGCTAAGCATAATTAGAAGAAGGCATTATATTTTTTAAGTGATGTAATGTTTTTGTTAAAAGAAAAGACAGCAAAAAGTTTTGGGGGGGCGGGAAGAGTATGGACCACCTAGAATTTCACTGCTTTAAATATTCTGATGACTGCCCTCCCAGCTGGCTCACAACATGTGTTATAACAGTGTCCACCCCTTTGTGACCTCACGGACTGTAGCACATCAGCCTCCTTTGTCCATGGGATTTCCCAGGCAAGAATACCCGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCTGTCCCAGGGATTGAACCCATGTCTCTTGCATCTCCTGCATTGGCAGGTGGATTCTTTTACATTTATTCAGCTTTATATCAATGGTTCCGAACTAGGGGTGGTCCTGCCCCCAGGGGACACTTGATGATGTCTGGGAAGCGTTTGTAGTCATGACGGCTGGGGAGCTCCTGGCATCCAGAGGTGGTGGGCTGGCGAAGCTCTCCACCCCACAGTGCCCAGGACGGCCCCCTCCCCTGCAGAGAATGACTGACCCTAAATGTGAACCTACACTTCAGTGACAAATTTTATGTTATATGTACTCTACTACAATTTAAAAAATCAATTTCACCTATTTCTTTTTTTAAAAAATGGATGGTAGAAATGTACAAGTGCACACAGGGGGCATGTATGCTTGGGTTACACAGCCGGCCCGGGTGCTGACTGGCATTCTGGTGTGTTACCTGTCTGTACTCACTCTGAGAAGATTGTTTCAGAAAGACTCAGTGAAAAGGAAGCAGAGAAGTGATGTTTTTCCTGCTCTGGAGTTTCTGCCTGGAGAGAGAAATCTCTGTGCAGACAGGAGAGATGGCGTGAGGTCAAGTACCTGGTTCTTGTCTGCCCTCAG
Seq C2 exon
GCCACTGTCCAGGGAATGTCTTTTCCTGCGGGAACAGCCAGTGTGTGACCAAGGTGAACCCAGAGTGTGATGACACCGCGGACTGCTCCGACGGCTCCGACGAGGCCCACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718:ENSBTAT00000000958:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]