RnoINT0153465 @ rn6
Intron Retention
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11692421-11693387:-
Coord C1 exon
chr7:11693346-11693387
Coord A exon
chr7:11692535-11693345
Coord C2 exon
chr7:11692421-11692534
Length
811 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GCTTGGTTCTCTGCTCCCAGGCC
3' ss Score
7.95
Exon sequences
Seq C1 exon
GAAGGTGTGAAGGTCCGGTGACCGAGAGGGACTTAAAGTCAG
Seq A exon
GTAGGACTGGCCCTCAGCTCAGCTCCCTGGAAGGTGCCTTCGACGTCTCTCTGGGAGGCACATGTGCAGTTCCTGTGGCCCTGGGAAGACAACACAGGGCCAGGGGAGCCCGGCTGTGCAGCAGGATGTGCTGCTGGGAACTTAATCTATTTTAAAAGGCAGGGTCTCACTATGTCGCCCAGGCTTGCCTCAGACTCAGAGCTCTACCTGCCTCTGCCTCCTGAGTGCTGGGGTTAAAAGGGTGGGCTCCCATCACTAGCCACATTTATTTTTATGTTTTCTCTGTCCCTCCTCTGTTACTGTGACAACTGATGCAGACAATTTAAGGGGGGAGGGCTTACCTTGGTCAGTTCTGACGTCTGGGCGGGTGTGGCAGCAGGAGGGGAGTCGGAGTCCTCAGTTGGGAAGCAGAGAGGGGTGACTGCTGGGGCTCTAACTCCCTCAGACAGGTAGAGGCTTGTCTCCATACTGTCTCTAGATCCCACTGAGGAGACCATTAAGACCAGCCTTCACAGAAGGTGATGGAATTCTATTGTAAAAACAAAATCTTTAATCCCTGCAGTTGGGAGGCAGGCAAAGGTGGATCTCTGTGAGGTCAAGGCCAGCTGGGTCTGCAAAATGAGTTTCAGACTACACAGAGAGACACCCCACACACACACCTCACTCACGTCCATGTTGTGTCTCTGTCCGCAGAGATAAGCAAAAAGCTCACAGAGGTTTTTACACTGTTGAGGTACCTAAAGGACCCATGCAGGTCGCTGCCTCTGCAAGGAAGAGGTTCCGGGCCCCCAGCTTGGTTCTCTGCTCCCAG
Seq C2 exon
GCCACTGCCCCGGGAATGCCTTCTCCTGTCAGAACAGTCAATGCGTGAGCAAAGAAAACCCGGAGTGTGACGACAGAGTGGACTGCTCTGATGGGTCTGACGAGGCTCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429:ENSRNOT00000049221:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]