HsaINT1044734 @ hg38
Intron Retention
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2408356-2410394:+
Coord C1 exon
chr19:2408356-2408630
Coord A exon
chr19:2408631-2410257
Coord C2 exon
chr19:2410258-2410394
Length
1627 bp
Sequences
Splice sites
5' ss Seq
TCCGTAAGC
5' ss Score
5.75
3' ss Seq
TTCTCTCCCCATTCGGCCAGTGG
3' ss Score
5.17
Exon sequences
Seq C1 exon
GTTCCAAGACCCGACGAAGTGGGTGGCCTACGTGGGTGCGACCTACCTCAGCGGCTCGGAGGCCAGCACCGTGCGGGCCCAGGTGGTCCAGATCGTCAAGCACCCCCTGTACAACGCGGACACGGCCGACTTTGACGTGGCTGTGCTGGAGCTGACCAGCCCTCTGCCTTTCGGCCGGCACATCCAGCCCGTGTGCCTCCCGGCTGCCACACACATCTTCCCACCCAGCAAGAAGTGCCTGATCTCAGGCTGGGGCTACCTCAAGGAGGACTTCC
Seq A exon
GTAAGCATCTTCCTCGGCCTGCAAGTGAGCTCAGGCAGGCAGGCGGGCAAATAACGCAGAAAAGGGCCAGGTGAGGTGGCTCACGCCTGTCATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGCGTTTGAGACCAGCCTGGCCAACATAGTGAAAACCCGTCTCTACTAAAAAATACACACACACACACACAAAATTAGCCAGGCATGGTGGTGCGTGCCTATAATTCCAGCTACTCAGGAGGCTAAGGCAGGAGAATTGCTTGAACCCAGGAGATGGAGGTTGCACTGAGCCAAGATCGCACCACTGGACTCCAGCCTGGGTGACAGTGGGAGGCTCCATCTCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATGATGATGCAGAAAAACACAGTGGGTCTGCATTATTCTCTGATTCTGTATTCACGAATTCCACTGCTTGCTAAGATATATTTATAACCCATCATCGATGCTACTGCGATTTTTTTTTTTTTTTTTTGAGATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCTGCTCACTGCAGCCTCCGCCTCCGGGTTCAAGCGATTCTCTTGCCTCAGCCTCTGAGTAGCTGGGACTATAGGCATGCACCACCACACCCGGCAACTTTATTTTTGTATTTTTTAGTAGAGACAAAGTTTCACCGTGTTGGCCGGGCTGGTCTTGATCTCCTGACCTCGTGATCTTCCTGCCTCAGCTTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACCTCACCCGGCCAAAAAAATTGATCTTAATGTACTAAAATGCACATCTAAATAGTCACCTGTGGCCAGTGGCTACTATATTGGGTGGTGTAGTTCCAGGGGGTTGTCAATCAGCCACAAGATGACTGACAGAGGGAAATGAATCCAGTGGAGAAAAATAAGGTGGGGGTGGCAGCTGCAGCTTTAAATAGGGAGGTCAGGAGATGCCTCCTGGAGAGAGGAGATGAAGGAGCAAGTCAGGCAAATTCTGCAGGGACAAGCATTTCAGACAGCGGGAACAGCATGTGCAAAGGCCCTGGGGTGGGAGGACAGCAGGGCAGGGGTTGATGTGACTGATTTAATATTTAGCAAGGGTGGTGCTGGCTGCCGGGTTGGGAATGGATTTCAGTGGGGTGGGACCAGAGTAAGAGAAGTGAGTGGGGAACAGCTATAATGACCCGGGCAAGGATGGGCGTGAGACAGGGGCTGATTCTGTGTATATTTGGGGGCTGACCTGAGGCCAACTTGGAATTTGAGGACTGTGGACCTGGAATGAGGGGCCTGAGATCCCTGAGATGGGGAATGCTGAGGGGTGGAGCTTGCGGAAGGGAGATGAGGACCTCGGGCTGGGGGTGTTAAGTCTGATGCCTCTTCCTTGTCCAGGCAGAGAGTGTTACCAGGTGGGGTGTTTACCTTTTGTAGTTTCAGAGCCATGTGTTGTAGGTGGCCATGCTTGGAGCTGGGGAAACTGAGGGAGGCTTGGAGAGGAGCTGTCCTTCAGCCTCCCAGCTCAAAGTGGCTGCCAGGGCTCCGGCACTCTCACCCTGCTTTTCTCTCCCCATTCGGCCAG
Seq C2 exon
TGGTCAAGCCAGAGGTGCTGCAGAAAGCCACTGTGGAGCTGCTGGACCAGGCACTGTGTGCCAGCTTGTACGGCCATTCACTCACTGACAGGATGGTGTGCGCTGGCTACCTGGACGGGAAGGTGGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297:ENST00000332578:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(40.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTGCGACCTACCTCAG
R:
GCACACCATCCTGTCAGTGAG
Band lengths:
344-1971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains