RnoINT0153468 @ rn6
Intron Retention
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11689045-11690294:-
Coord C1 exon
chr7:11690020-11690294
Coord A exon
chr7:11689182-11690019
Coord C2 exon
chr7:11689045-11689181
Length
838 bp
Sequences
Splice sites
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
3' ss Seq
CTCTGTTGCCTTATGGGCAGTGG
3' ss Score
3.89
Exon sequences
Seq C1 exon
ATTCCAGGACCCTGCGCAATGGGCCGCCCAGGCAGGCAGCGTGCACCTGAGCGGTTCAGAGGCCAGCGCTGTGCGTGCGCGCGTGCTCCGTATCGCCAAGCATCCTGCCTACAACGCGGACACGGCGGACTTTGACGTGGCGGTGCTGGAACTGGCTCGCCCGCTGCCCTTCGGCCGCTATGTGCAGCCTGCCTGCCTTCCCGCGGCCACTCACGTCTTCCCACCGCGCAAGAAGTGCCTGATCTCGGGCTGGGGTTACCTGAAGGAGGACTTCC
Seq A exon
GTAAGTCCCCCGCGCATTCTCCCACTCCTAACTGGGACCTTCTAGCCCCAAAGTAGATGACCAGGGCCATGGTGTCTCATGCCTCTGAGCTCATAATCAGGGGGTCTGAGGCAGGGATCAGTCCAGGGACCTTGAAAAGACCTGAACTCAAAAAAAAGAAAAAAAAAGCTAGGGGCGTGGCCCCAGCCTAGAATCCCCCAGTGAGGGTCTGTGGGCGTGGCCAGGGTGGAGCCTCGGGCTGGAATCCCCCAGAAAGGGGCTGGGGGCGTGGCCAAGGGTAGAGTGTTTAGCTAACAAGTGGGGCGCCCCTGAGTTCCATACCTCCAGTAAAGAAAAAGTAAGAAATTCTGTAAAGCTAAAGGTGTTGGCATGCAACTGTCATCCCTAAATTTAAGATCAGAGGGATCAACCAGGAGGATCTGAAGTCCAAGGTCATTATTTTTGGCTATAAAGCGAGTTTAAGGCCAGCCTAGGCTATAAGAGACTGTGTCTCAGAAAACAAGAAAAGCCTATAATCATAAGGCGGTGGTGAAGGCGTCTCATTGGGGCTGAGCCGTTGGGCCGGAGGAGAGCGAGTTCACCCTCAGGCAAGTCGAGGTTGGGGCCTGAGCGCATCACACGAGAAAGCAGATGTGGTCTAGCATGTGTGGGGAGAAGAGATGAGGAGTGAAAACTTGACCTCTGTTAGTGCCTAAGTAGACGTGGACATTCGGGTGAGGGTCGGGTGGCCCCAGCAGCTTGAGTACTGGAAGAAGAAATGGTATTCAGCCTCCTGGCTCAAAATGGCTGCTGGGGCTCCGTGGCTCTCACCTGCTTTTCTCTGTTGCCTTATGGGCAG
Seq C2 exon
TGGTGAAGCCAGAGGTCCTTCAGAAAGCCACAGTGGAATTGCTGGACCAGAACCTGTGTTCCAGCCTGTATGGCCACTCGCTCACGGACAGGATGGTGTGTGCCGGCTACCTGGACGGGAAGGTGGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429:ENSRNOT00000049221:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(40.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCCTGCGCAATGG
R:
GTGAGCGAGTGGCCATACAG
Band lengths:
356-1194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]