HsaINT1044833 @ hg38
Intron Retention
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
Coordinates
chr6:32068822-32069861:-
Coord C1 exon
chr6:32069553-32069861
Coord A exon
chr6:32069137-32069552
Coord C2 exon
chr6:32068822-32069136
Length
416 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TACCTGTCTCTGTGAACCAGCCG
3' ss Score
4.64
Exon sequences
Seq C1 exon
AAGCCCGGAGTGCTATGGATGATACTGGAACAAAGCGTCCCCCAAAACCCCGTCTGGGGGAGGAGCTGCAGGTGACCACCGTGACCCAGAACTCCGTGGGCCTCTCCTGGACAGTCCCTGAGGGCCAGTTTGACTCCTTTGTGGTCCAGTACAAAGACAGGGACGGGCAGCCCCAGGTGGTGCCCGTGGAGGGCAGCCTCAGGGAGGTCAGCGTGCCGGGCCTGGACCCTGCCCACAGGTACAAGCTGCTGCTCTACGGGCTGCACCACGGCAAGCGTGTGGGCCCCATCTCGGCCGTCGCCATTACTG
Seq A exon
GTGAGTGTGCGGCAGCTGGAACACCTGTGCCTCCTTCCCGCCTGGCTCTCCTGGTCTGACTGAGCCATAAGATCTCTGAGCTTCCCATTTTATATCATTTCCATTGATCCAGAAAGTTTCCTTGTGCCCCTTTAGAGTCAGTTGCCCCAGTCCCAGCCTCCAGCAACCACTGTCTGCTTTCGATCATCCTGGAGACAGCATTTTGACTCTCCATGTAATGGAATCACAATACGCAGTCTCTTGTGTTTCATTTCTTGCAATTAGCACAATGCTTTTGAAATTCACCCATGTGCAGCAAAAGCTGGTCTTTCGATTGCTGACTGCTTGCCCTCACTCCCTCTCCTCCCTCACTCCTCCTGAGAGTCTGGGTGCAGCGACACACCAGCCATCTGTCTCTACCTGTCTCTGTGAACCAG
Seq C2 exon
CCGGCAGGGAAGAAACGGAAACTGAGACCACGGCCCCGACCCCTCCAGCGCCTGAGCCCCACCTCGGGGAGTTGACAGTGGAGGAGGCCACGTCACACACCCTGCATCTCTCCTGGATGGTGACTGAGGGAGAATTTGACTCCTTCGAAATCCAGTACACAGATAGAGACGGGCAACTCCAAATGGTCCGCATAGGAGGTGACCGGAATGACATCACCCTCTCTGGCCTGGAATCCGACCACAGATACCTGGTGACCCTGTATGGTTTCAGTGATGGGAAGCATGTAGGTCCTGTCCATGTCGAGGCCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477:ENST00000375244:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=NA C2=0.481
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=76.9)
A:
NA
C2:
PF0004116=fn3=WD(100=75.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTGGACAGTCCCTGAG
R:
TTCTCCCTCAGTCACCATCCA
Band lengths:
342-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains