HsaINT1044843 @ hg38
Intron Retention
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
Coordinates
chr6:32047734-32048650:-
Coord C1 exon
chr6:32048363-32048650
Coord A exon
chr6:32048013-32048362
Coord C2 exon
chr6:32047734-32048012
Length
350 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CACCTCACTGTCTTTTCCAGCCC
3' ss Score
8.71
Exon sequences
Seq C1 exon
CGCCCCTGCCCACACCACTGCCGGTGGAGCCCCGCCTGGGGGAGCTGGCGGTGGCGGCCGTGACCTCGGACTCAGTGGGCCTCTCATGGACGGTGGCCCAGGGCCCCTTTGACTCCTTCCTGGTACAGTACAGGGACGCGCAGGGGCAGCCCCAGGCAGTGCCTGTGAGCGGAGACCTCCGAGCGGTCGCCGTCTCGGGGCTGGACCCGGCCCGCAAGTACAAGTTCCTGCTCTTTGGACTCCAGAATGGGAAACGCCACGGCCCAGTCCCTGTGGAGGCCAGGACCG
Seq A exon
GTGAGTGAGGGCTGGAGGCCTCCCGCGGCCAGAGCCTTCGCCCCCTTGTGGCACCTGTTGGAATTTCACGTTCTGTGCCCCACACTCCAGTCCTCAGCACCCACTGATTTATTGGGTCCAGGAAAACCCAGGCCCTGAGCTCTCCTCTCCCACTCACACTCATCCCTCTCCCTACTTTCCCTGCACCCCAGGGGACACTTGCTTTCTTGTCTGGCTCCTCTTTTATTCCTACTCCTGGCCCAGTCACCCTCCCGTTCCTGGGACCGGCTCACAGAGCCATAGCAGCCCAGGAAGCTCCGTGGCCCCTTTGCCTCCATCCCACTCTCCATGCACCTCACTGTCTTTTCCAG
Seq C2 exon
CCCCAGACACCAAACCGTCTCCCCGCCTGGGGGAGCTGACTGTGACAGATGCGACCCCTGACTCCGTGGGCCTCTCGTGGACGGTCCCTGAGGGCGAATTCGACTCCTTCGTGGTCCAGTACAAGGATAAGGATGGTCGGCTCCAGGTGGTGCCGGTGGCAGCCAACCAGCGGGAGGTCACAGTCCAGGGCCTGGAGCCCAGTAGGAAATACAGGTTCCTGCTCTATGGTCTGTCAGGCAGGAAACGACTGGGCCCCATCTCTGCTGACAGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477:ENST00000375244:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=NA C2=0.309
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=81.4)
A:
NA
C2:
PF0004116=fn3=WD(100=87.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCAGTGGGCCTCTCAT
R:
TGTACTGGACCACGAAGGAGT
Band lengths:
344-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains