HsaINT1046887 @ hg38
Intron Retention
Gene
ENSG00000223837 | XXbac-BPG181M17.4
Description
NA
Coordinates
chr6:32970232-32970886:+
Coord C1 exon
chr6:32970232-32970433
Coord A exon
chr6:32970434-32970750
Coord C2 exon
chr6:32970751-32970886
Length
317 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGA
5' ss Score
2.95
3' ss Seq
GGGCTCTGGTTGATTCACAGAGT
3' ss Score
4.71
Exon sequences
Seq C1 exon
AAAGTTGCTGTGTCATTGCCCTCCATGCTGCAGCCACCCAAACGGGGCCGCTTGTACTTTTGGGGGCCAGGGCCTGATCCCTGGCTGGGGGAAGGGGACTCTGCTCTCCTGACGCTCATTTTCCCCCGCCCTCCCGGGGTTTGCCCTACTCGGGGGGTCAGAAGACAGGAGATTGGCGGCCATTTTAGACGCAGTAACCGAG
Seq A exon
GTTGGAGTTGAAGGGCTACTGCAGAGGAGGGAGGGTGGCGTGGTTGCAGCTCAAGGACCTAGGCCCTTACGAGCCCTTCCGGGGCGAGGGGGAATCTTACCGTATATTTGTTCACCTACGTTGATTATTTTTCCCAGATACGTACACAAGTTTGTTTTCTCCCTGGTAGCGAAGAAAGGGGAAACGGGGGAGGGGACGCCCCACCAAAGCCCAGGTTTTCTCGGGTGGGGGAGATCCTTTCACTCTCTTGTAAGGGGGCGGGGACGGCCCCAGAGATGCTCTGGAGATCCTGACTCTGGGCTCTGGTTGATTCACAG
Seq C2 exon
AGTCTGCACCCTTATTTAGATAACCAAGTTAGGAGGAAGACTTAAGAGTAAGTTGGGGGGAGGGGGCGAAACTGAGCTCCCAAAATGGCTCCTGCCCCTCCTCGGAGGCGGACGGCCGGGGGGAGGGGAGGAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000223837:ENST00000415875:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCTGTGTCATTGCCCTC
R:
TCCGAGGAGGGGCAGGAG
Band lengths:
306-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains