HsaINT1005382 @ hg38
Intron Retention
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:HGNC:1103]
Coordinates
chr6:32968660-32972927:+
Coord C1 exon
chr6:32968660-32969056
Coord A exon
chr6:32969057-32971594
Coord C2 exon
chr6:32971595-32972927
Length
2538 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CGTCTTTTTCCTCGTTTCAGATT
3' ss Score
11.41
Exon sequences
Seq C1 exon
GGACTGCGGGATAGGAAGCTGGGGATATGGACAAGCAGCAGCGTTATAGCGCTCTGGGTTTCGGGACATAGGCCTGGGCCATGCGGCCCCCTTGGCCCCTTGGCGCGACCCCCAGGAACGTTCGGAAAGCTGGTCCTCGTGGCTGGGGGAAAGGCGGGGGGTGGGGGGGAAGCGGGCACGTGACCCCGGTCAGCCAATCTGGGTGCTGCTGACGTGGCCGCGCGGCCCCGATGCTCTCCCCACCCCCCCAGCCCGTTCGGGAAGGGAGGGGCTGGGGGCTACGCCCCCTCCCCCAGCACGGCTTCGTTTTCTGGGGGGGGGTTGACACCCCGGATTACATACCCCGTACCAAGCCGAGGGCAACTTTGGAGGCCCCCTGGAAGGCTTTAGGATCCAG
Seq A exon
GTGAGAAGGGGCCCTTGTGGGGCGGAGATGTCAGTCAAGTGCTTAACCAATGGTGGGGAGTCCGGGAGGGGGATTCTTGGGGTTCAGGAAAGAATCCTGAGAGTGGGAAGATTTGTCCTTCAAACCTTTTACAGCCAATGGGAGCGTGGAGGGGGGGCGAGCGGGAGAGGGCCATGGGGGGGGAGGGGAATGGCCAGCCTCATGCCTCCGTACCCATTGGAGGGCAAAGGGGTTAGGGGGCGGTGTGGCCCCCCCTATTCCATTCGTCCCCTGGGGGTACAGCAGCCGGGAGCCAGGTGAGAAGGGATCCATCGGCGGCCGAGGGAGGGGTGACCTGGCGGTGGGCTGAGGAGTGGTGGCTGTGGCCCCTACCCGTGGATGTGAATGCTTTAGGAGTTGGCCACCCATGTTGTGAACTGAGGTTGTTCCCAGGCGCCAACTTCCTTTCTCCCCAGAGCCTCTGGAGGGAGCATTGCTGTGCGCCCTTTGTGTCCGCGGTAGGGGAGCTCCAGTCGTCACACCGCAGGCTGGAGGTTACGCTTCGAGTCGCTTACCGAATTTGTGTGCATTCACGTGGACACGGCCTGTGGGGCCTTTTGCCCCTGTAGGGTCTTTACTGAGCACGTGTCTACTCCAGGCTGGGGTGCTTACAAGCTGAAAGCTTGAGGTCTGCTTAGGAACAGAAACCAGGCCCAAGGTGGGTGCTGGCAGTAGGGGGTCTAGACAGCATGGTCTGAGATGCGAGGGAGGCTCGGGACCTGGAATGATTTCACAGCTCCCAAGGTTTCGGGTTTCTCCAGGGTGGCCTCTTCCATCGCCTCCCTCATCCCCTCCCCCAGTCCTGAACAGTTCTCTCCTTGTGTACTGCGGGGGAGGGAACGGAAAGGAGGAAAGAGTTACTTTCCCAAATTACTGAGTAGCAGTAGCCTCCCTGGTGACTCATGTGGGGGAAGGGAGGATAGAGGATCGGGAGGCAGTGATTTTCCGGAATGCAGGGAATAAACGAGAGCAATGTCTGGCTGCCCTTTTCCTAAGGCCTAGTATTTTCTCAGCCTCCTAAGTTTTTATTCCATGGCCGGCCCCCTGATGGGCCTCTGTCCTGGCCTGCAGAGCCCCGGTGGAGAAAAGCAGATTTGGGAGGTTGGGCCGCTAGGGGGAGGGGAAAAGGCCTCTGCAAAGTTGCTGTGTCATTGCCCTCCATGCTGCAGCCACCCAAACGGGGCCGCTTGTACTTTTGGGGGCCAGGGCCTGATCCCTGGCTGGGGGAAGGGGACTCTGCTCTCCTGACGCTCATTTTCCCCCGCCCTCCCGGGGTTTGCCCTACTCGGGGGGTCAGAAGACAGGAGATTGGCGGCCATTTTAGACGCAGTAACCGAGGTTGGAGTTGAAGGGCTACTGCAGAGGAGGGAGGGTGGCGTGGTTGCAGCTCAAGGACCTAGGCCCTTACGAGCCCTTCCGGGGCGAGGGGGAATCTTACCGTATATTTGTTCACCTACGTTGATTATTTTTCCCAGATACGTACACAAGTTTGTTTTCTCCCTGGTAGCGAAGAAAGGGGAAACGGGGGAGGGGACGCCCCACCAAAGCCCAGGTTTTCTCGGGTGGGGGAGATCCTTTCACTCTCTTGTAAGGGGGCGGGGACGGCCCCAGAGATGCTCTGGAGATCCTGACTCTGGGCTCTGGTTGATTCACAGAGTCTGCACCCTTATTTAGATAACCAAGTTAGGAGGAAGACTTAAGAGTAAGTTGGGGGGAGGGGGCGAAACTGAGCTCCCAAAATGGCTCCTGCCCCTCCTCGGAGGCGGACGGCCGGGGGGAGGGGAGGAGGGGAGGAGGGGGAGGGCTAGTCTGAGCCGCAGCCGCCGCCTCCTCCGCTCGCCCTCCTCCCTGGCGCTGACCGATGGACCAGCCGCTCCGTGGGGAGGACTCCGGACCCTGGTGGGGGGGCGGGGGGGTTCTTTCGCCCCCGTGGCGGAGGGCCCCTGAGAGGCGGATACGGGTGTGCCTTTGGGGGTGATGTGGCGTGTGGGGGGAAAGGTCCGAGCTCGCCTGGAGGGGGAGGGTTTTTCCCTTAAGTCATCCCTCCCAGGACTTGCTTTTTCTGCTCTGAGCCGGACGCCGGAATGGAGTTTGAGGAAGAGGTGAGGTGTGTTGCATTGTATAGGGTAGATGGATGCGTTTGGAGATTTTAATCCCACTTTTAGGGTTGCCGAGGATTTTTCGAACGAGCAGAAATGTATTGGTAACTGTAGGTGTGAGTGGGGAGGGATTAGAAAGGTGCTTGGACGTGCAAATTTGGGAGACGTATTTTAGCTTTTGTGGTCTTTGGGACTAAACAGTAGTAAATAATGTTTTGCTCGTCTTTCCATCGTTTGGCTTGAGGGAGGGAGTGGAGTATTATAAGACTCTGGCAACACTGTTTTAGACTGTGGGGCATGGGAACGTTAGATCCCCTCATCGCCGTTCTGAAGCCCGTAGCTGTTCGCCATAGAGGAGCAGGCCGCGGCTTCTAAGATGGCGTCTTTTTCCTCGTTTCAG
Seq C2 exon
ATTCTTCGCTGCTGCTGCCTTACCGCCGAGAACCACCACCCGCCAGGCGTCTTGCGGCCACACCCCTGGCGGGTTCAGGCAGGCTACGCCCACGCGACCCCTCCCGTTTCCCTGCTTTGGCCAATGGAGGAGCTACGAATGGCACGACCTGCTCGAGCTTGGCAGTCTCCAGTTGGGCTGTGCATGGAAGCTTGGGAAGACTTTGTTGGAAGGGGAGGCGGGGAGAGAGTGCTGGAGGCTCTGGGGCGATGGCTTCCGCACCTCTTCCAACCACCCTCTTTCCCTGGAGTCGGCGGACCACAGCTCAGCCAATTGGCTTGGAGATGTGGCGGGTTGCCACTTCCCTGTGGGTCTCTGCGGCACTCTTCTGCCTGGTGACTGACACCTTGGAAATGAAGTTTATGACGTCATCGTTGCGGCTGGCCAATAGAAAAAGCTCCCGCGGAGAGGTGTTCCTTCCCCTTCGACTCAGCTTCTTCACCCGCGTGAGCGAGCGCGCGCGCGCGGAGGGGGTGGGGAAAAGCTCAAGCAGGGTGGCGCGCATGAGCGGCGAAGCTCCTCCTCCCCGCCTATATATAAAGGGCTGGCGCGGGGCTCGGCGGCGCCATTTCGTGCTGGAGTGGAGCAGCCTCTAGAACGAGCTGGAGGATTCTGCCTACCGATACAGAGCCTTCGAGTCGTCCGGGGCCGCCATTACAATCCACCTCCATCCGCTTGGAAATGGCCTTCGTCCCGGCCTATGACTGGTCCCAGCGGGCAGTACAGACCCCCTAGAAGCCCCTGGAGCTCCCCTTTTTCGGGCCCCGCCCAATCCTCGGAGTCTGTCCACCCCCTCTACTCCGCCCTCAAGAGGATTTCAAAGATGGAGGCGGCGGCTCCCTAAACCACTTTTCGTGTTCATCCGCCTCCATCCGAGATCGAAACGGGACCTCGTCGGCCCCGTAGGGGCCCGACAAGAAGAGGGAATCCCTGCAGACCAACAGCGGGCTATATTGACGACGGTGTCTGAGATCGGGGACCGTCTTTTGAAGAGTCAGTCCCTCCTTAGTTGCCCGCCTCAGCTGAGGCCGCCGCCATTTTCTTGCTGTCCGCCGTCTGCAGAGCGCGCCAAGCTGCCCGGAGCTCTCCGAGAGGCCCCAAAGAGACTGCTTTCGTGCCGGCCAGGCAGGGGGTTTGTCGCCTGGAGGCCCAAGAGGAACGGCCTCCCCCCAACTTAGCGGGTTATGCTGGACCGGGCGGTGAGGGGAACCGAGGCCACCCGGACTTTCCGCGGCTGAGGGCAGCGCCGGTTCCTTGCGGTCAAGATGCTGCAAAACGTGACTCCCCACAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256:ENST00000374825:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.584
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains