RnoINT0004995 @ rn6
Intron Retention
Gene
ENSRNOG00000055766 | AABR07044415.1
Description
NA
Coordinates
chr20:5260885-5261666:+
Coord C1 exon
chr20:5260885-5261168
Coord A exon
chr20:5261169-5261528
Coord C2 exon
chr20:5261529-5261666
Length
360 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GCCTGTCTTCCTTGTTTCAGATT
3' ss Score
11.66
Exon sequences
Seq C1 exon
ATGAGAGGAGGGGGAGGGGGCGAGACAGCTCCCAAAATGGCTCCTGCCCCTCCTCGGAGGCGTCCGGCTACGGGGGGGAGGGGAGGGAGGAGGGCTGCAGAGCAGCGCCGCCGCCTCCTCGGCTCGCCCTCCTCCCTGGCGCTGACCGATGGAAGAGGCGCTCCGTGGGGAGGACTCCCGGCCCGATGGGGGCGGGGGGCTTCAGTTCGCCCACGCTGGGACGAGATGGGGCCAAGGAGCCGCGCCCGCTCTCCCCACCCTGACGCCGGAATAAGTTTGCAGAG
Seq A exon
GTAGGTTTTTCTAGGGTATGGGGACGCCTTTTGCGTTCGTGAGGCAGTTAAGTGCGCTAGAAGCTGAAGGTACGGGTGGGCAGAGTGAGGGCCCCGGGGACTCGCTAGATGTGAAACACTTGGGGCGACCTCGCATCTTGAGAGTTGAGGGTTTTTAAAGCAGCGCGAGGCCTTGGTTGTTTGACTGCATTGGTTAGGGGAAGGCACAGTTAGTCTTGGAACTCTCTAATCCAGTCAAGTGTTGGGTCATGAAGCCCAGCAATGTTAGATTGCGTCGCGGGGATACTGGGGAGCGCTCGGAGGCCTCTGCCCAAGAGCAGGCCGCGGCTTCTAAGATGGCGCCTGTCTTCCTTGTTTCAG
Seq C2 exon
ATTCTCCACTGCGGCGGCATCGCAACCAAGAGCTTTTTGCCGGCCCCGCCCGCGCAGCCCATCCCACTCTGCACCCCGCCCGCGCCGCCAATGGAGAAGCTGAGAATGGCGCGGCCAGCCCGCCGCGGGCGATCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055766:ENSRNOT00000079282:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGACAGCTCCCAAAATGG
R:
GGGGTGCAGAGTGGGATGG
Band lengths:
342-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]