RnoALTD0000537-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000055766 | AABR07044415.1
Description
NA
Coordinates
chr20:5259096-5261666:+
Coord C1 exon
chr20:5259096-5259196
Coord A exon
chr20:5259197-5259491
Coord C2 exon
chr20:5261529-5261666
Length
295 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCTGTCTTCCTTGTTTCAGATT
3' ss Score
11.66
Exon sequences
Seq C1 exon
CCTTCTTGGCTTCCGGGGGGGTTGACACCCCGGATTCCGTGCTCCCCCCCAGCCTGGCTGAGGGCGACTTTCGAGGGCCCCCCCGTGGCTCCTGGATCCAG
Seq A exon
GTGAGCAGGGGCCCCTGGGGCGGGGACGCCGTCGGTCATTTAAATACATAAGTAAAGGTGGGGAGTGGGAAGAATTCTTGGGGTTCAGGAGGAAAATCCCAAGGGGGAAAGACTTGTCTTTCAAACACCTGACAGCCAATGGGAGTGTGGACTGGGGCCAGCCCGAGAGGGCCACTTGGGGGGGAGGGGAATGGCCAACCTCGTGCCTACGTACCCACTGGAGGGCAAAGGGGCGAGGGTGGCGTGTCTCCCTTGCCATCGTCCCCTGGGGGGGGGTACAGGAATCTGGAGCCAG
Seq C2 exon
ATTCTCCACTGCGGCGGCATCGCAACCAAGAGCTTTTTGCCGGCCCCGCCCGCGCAGCCCATCCCACTCTGCACCCCGCCCGCGCCGCCAATGGAGAAGCTGAGAATGGCGCGGCCAGCCCGCCGCGGGCGATCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055766-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTTGGCTTCCGGGGG
R:
CGCCATTCTCAGCTTCTCCAT
Band lengths:
212-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]