HsaINT1047030 @ hg38
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100792405-100794018:+
Coord C1 exon
chr7:100792405-100792479
Coord A exon
chr7:100792480-100793819
Coord C2 exon
chr7:100793820-100794018
Length
1340 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGC
5' ss Score
6.74
3' ss Seq
GACCATGACTGTCCCCGCAGCCA
3' ss Score
7.7
Exon sequences
Seq C1 exon
GCACTGCGTGCTGGATCTGTGCTCTGCTCAGGACCCAAGAGAGCAAGAGGAGCTGCGTTGCCAGGTCCTCAGTGG
Seq A exon
GTACGCCATCCTCTGCCAGGAGGCGGGCGCTGCCCTGGCTGGCTGGCGGGACCGCACCCTCTGCGGTGAGGTGTTGCCCCTCCCTGTGCCGACCCTGACCCCTCTGCCGTCCACCTCTGCTGAACGCTCTTCCCACCATTGCCTCATCTCGGGCTTTCTGTCTTAGTCCCATCATCCCTCGAATTTCTGCCTTAGTCCCAGGTCCAAGTCAGCACAACCGGCAGCCTGGCTCCTTCTCTGCCCCTGCCTGGGAGCCTCCCAACCCCATCCCGCATCCCGCTCCTTCCTGCCAAGGTCCACCTTCGCTCAACCAGTTCCTTCAAATGTTCTAATGTTGCAGACCCTGGATGGGCTGGGCGTGGTGGTTCACACCTGTAATCCCAGTGCTTTGGGAGGTTGAGGCTGGAGGATGGCTTGAGCCCAGGAGTTCCAGCCAGGCTGCAGTGAACCATGACCGCACACCACCACACTCCAGCCTGGGCAACAGAGCAACATCCTATCTCAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAACGAAAAAAAGAAAGAAATTAAAAAAAGAAAAGACTAGACAGGCTGGACATGGTAGCTCATACCTGTAGTTCCACCACTTTGGGAGGCAGAGGCAGGAGGATCAATTGAATCCAAGAGTTTGAGACCGGCCTGGGGAACCAGTGAGACCCCATCTCTATAAAAATCTTAACAAATTGGCCGGGTGTGGTGGTGCATGCCTGTAACTCCAGTCACCAGGGAGGCTGAGGTGGGAGGATCATTGGAACCCAGGAGTTGGAGGCTGCAGTGAGCCGTGATCACGCCAGCCTGGGCACTCCAGCCTGGGCAACAGAGTGACTCCATCTCTAAAAAAAATTTAAAAAAATAAAAAATAAAAAAAAGACCCTAGATGAAGCTGCAACACGTTCTAGCTTCCTGCCTATATGCAACGCTGAGTGTTTTTGTTTTTGTTGTTGTTGTCTGAGACAGAGTTCGCTTTTTGTTGCCCAGACTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTTGTCTCAGCCTCCCGAGTAGCTGGTATTACAGGTGCCCGCCACCACGCCCGGCTCATTTTTGTATTTTTAGCAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACTTCAGGTGATCCACCTGCCTCATCCTCCCAAAGTGCTGGGATTTCAGGTGTGAGCCACTGTGCCCAGCCTACTCTGAGTTTTATCGGGTGACCTTGCCCCTGTTTGGCCTGCCCAGCCCCAGCCAGTTTCTGACCATGACTGTCCCCGCAG
Seq C2 exon
CCATGGAGTGTCCAGCAGGTACCATATATCAGAGCTGTATGACACCCTGCCCAGCATCCTGTGCCAACCTGGCAGACCCCGGGGACTGCGAGGGCCCCTGCGTGGAAGGCTGCGCCAGCATCCCAGGCTATGCCTACAGTGGCACCCAGAGCCTCCCCTGGCTGACTGTGGCTGCACCAGCAATGGCATCTACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839:ENST00000613979:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF087426=C8=FE(59.5=100)
A:
NA
C2:
PF087426=C8=PD(3.4=3.0),PF127142=TILa=PU(16.4=13.4)
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCGTGCTGGATCTGTG
R:
TGGTAGTAGATGCCATTGCTGG
Band lengths:
272-1612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains