HsaINT1047173 @ hg38
Intron Retention
Gene
ENSG00000238057 | ZEB2-AS1
Description
ZEB2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:37149]
Coordinates
chr2:144519959-144520905:+
Coord C1 exon
chr2:144519959-144520110
Coord A exon
chr2:144520111-144520214
Coord C2 exon
chr2:144520215-144520905
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
TTTCTTTTTCTTTTCTGTAGGAG
3' ss Score
11.46
Exon sequences
Seq C1 exon
TTTTGGCCAGAAATGGTGAGAAGAAAAAGCATGAAGAAGCCGCGAAGTGTGGGGGAGAAAAAGGTGGAAGCGAAGAAACAGCTCCCGGAGCAAACTGTACAAAAACCTCGCCAAGAGTGTCGGGAGGCAGGACCGTTATTCCTGCAGAGCAG
Seq A exon
GTTAGAACTGATCTCTTTCGGCCACTCCAGGAAACACAAACCTGGGGACGGACTGACGTGTTACGCCTCTTCTAATGACATTTTTTTCTTTTTCTTTTCTGTAG
Seq C2 exon
GAGAGAGACGAGAGACCCTGAAACACGCGCCACCTATCTTTGTGGGGAGGGATAATTGAAGCGCCCTGAGCGTGAGCATCATGTGAAAACGTGATCGCCAAGTTTCTCTCTGGGAAAGGATCTGGGATAGATTATACCTTGAAGTCTCCGCAAACGCTTTAGTGGAAGAAATGAAATTCCACCTCCCTCCCTTCCTCCTCTCCCTCCCTTTCGCCTTCGCCTCCCTCCCCCCTCCCTCCCTTCTCCCCCCCTCCACCCCCCCCTCCCCGCCCGTCAAGCCTTTGGCATCATTATCCTCATCACTAAATCCTACAGAGTACAGGGCGGAAAACGGTGCACACCATTCACAGAACTGGAGAACTCCAAGGGGCGAAAGTTAAAGGGAAAGATCCCGGGTCCTCAATCCAGATAGTCTCTTCTTATACAGATATCTCTAATGACCAGATTTGAGATGCACATCAAATTGTGTAGGTATCTCAGTACAGCTTCTGGAACAAAGTTCTCTGCCCTTTCTCTTATTGTTATTTTTTTCTTTTTAGGTACCAGAGCCAGAAAAAAAAATGCTGCATGGGAGCTGCATCTTAGGGCATGTGTATTAGGGTGTGTGCATGATGAATTTCTGGACTGGATCCCAATATTAAAAAGTAGTTTGGCATTTTAATAAAGGGTCTCTAAGTAAATTAAAATAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000238057:ENST00000427278:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCGAAGAAACAGCTCC
R:
CGTTTGCGGAGACTTCAAGGT
Band lengths:
244-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains