MmuINT0070146 @ mm10
Intron Retention
Gene
ENSMUSG00000052248 | Zeb2os
Description
zinc finger E-box binding homeobox 2, opposite strand [Source:MGI Symbol;Acc:MGI:3652108]
Coordinates
chr2:45112843-45114087:+
Coord C1 exon
chr2:45112843-45112993
Coord A exon
chr2:45112994-45113098
Coord C2 exon
chr2:45113099-45114087
Length
105 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
TTTCTTTTTCTTTTCTGTAGGGG
3' ss Score
11.32
Exon sequences
Seq C1 exon
TTTTGGCCAGAAATGGTGAGAAGAAAAAGCATGAAGAAGCCGCGAAGTGTGGGGGAGAAAAAGGTGGAGGCGAAGAAACAGCTCCCGGAGCAAACTGAACAAAACCTCGCCAAGAGTGTCTGGAGGCAGGACCGTTATTCCTGCCGAGCAG
Seq A exon
GTTAGAACTGATCTCTTTTCGGCCACTCCAGGAAACACAAACCTGGGGACGGACTGACGTGTTACGCCTCTTCTAATGACATTTTTTTCTTTTTCTTTTCTGTAG
Seq C2 exon
GGGAGAGAAGAGAGACCCTGAAACACGCGCCACCTATCTTTGTGGGGAGGGATAATTGAAGCGCCCTGAGCGTGAGCATCATGTGAAAACGTGATCGCCAAGTTTCTCTCTGGGAAAGGATCTGGGATAGATTATACCTTGAAGTCTCCGCAAACGCTTTAGTGGAAGAAATGAAATTCCACCTCCCTCCCTTCCTCTCTCCCTCCCTCCCTTCTCCACGCCCCCCCCCCCCCCCCCCCCCCCCGTCAAGCAAGCCTTTGGCATCATTATCCTCATCACTAAATCCTGCAGAGTACTGGGCGGAAAACGGTGCACACCATTCACAGAACTGGAGAACTCCAAGGGGCGAAAGTTAAAGGGAAAGCTCTCGGGTCTTCCATGCAGATCTCTTGTCTTATACAGATATCTCTGGTGACTAGGTTTGAGGTGCACGTCAAGTTGTATGGATACCTCAAGCACCGTTTTTGGAACTAAATTCTTGCCCTTTCTCTTATTACATTTTTTTTTTTAAAGATGCCAGAGCTAGGGGAGGGAAATGCTACTTGTACACTGCATCTTAGGATCTCAGTGTGCAGTGTATGTGTGTATGTGTGTGTGTGTGTGGGGGGGAGATTTTCTGGATTGGATCCCTATATTAAAAGTTTGGCATTTTAATAAAGGGTCTCTAGGTTAACATAGAGCTGTACTATGCTGGCCAATCTCTGGACCCCTCTACACCTCATGCAGACCACATTACAAAGTGAGGGGACAGGGGCAGGAGGAAGAAGGAGAAAGGTCAGAGGAACTTAGGACGAAAGAAAGAAGAGGGTGACACTAAACTGTGTGGGGTCTAAGTTTTGAAGTGCATATTTTTGATATTGCAATTAAACTAAAATTAAAAAGAAAAGACTCCACCTTTGCTCTGAAGGGATTGGTTATGCAAATATGGAAGGGATTTCCTGGAGAATACAGCTTTCTACTGTATGGTTAATTAAATAATCACTCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052248:ENSMUST00000130827:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGCATGAAGAAGCCGCG
R:
TCCCAGAGAGAAACTTGGCGA
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types