HsaINT1047194 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:37643265-37644736:-
Coord C1 exon
chr19:37644610-37644736
Coord A exon
chr19:37643364-37644609
Coord C2 exon
chr19:37643265-37643363
Length
1246 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TTCTATTATTTATTTTTAAGCAG
3' ss Score
5.47
Exon sequences
Seq C1 exon
GATTTGGTGATGTTCAGAGATGTGGCTGTAGACTTTTCTCAGGAAGAATGGGAATGCCTGAACTCATATCAGAGGAATTTGTACAGAGATGTGATATTAGAGAACTATAGCAACTTGGTGTCACTGG
Seq A exon
GTAAGCCTAGCATATCTGTGTCAGATAATTTAGACATTCACAGGACTGAATTTCTGGGCTGTCTTTGTTTTTTTCCAAAGACGAAGTCTCGCTGAGTCACCAGGCTGAAGTGCAGTGGCGCAATCTTGGCTTACTGCAACCTCTACCTCCTGGGTTCAAGCGATTCTACTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCACACCACCACACCCAGCTAATTTTTGTATTTTAAGTAGAGACGGGGTTTCACCAGGTTGGCCGGGATGGTCTTGATCTCTTGACCTCATGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGTCTGGGCTGTCTTTCTAAAAACTAGCTAAATGTCTGCTTTGTGCTTTGACAGTAAGTACCACTATTAAGCACCTTCATCTTTCTGTATAATTCAGTGACCGTTATATTTTTCTTCGACTTTTCTGTTATTACCGGTCTTTAATGACAGCTGGATATAAATTCTTAGACACTCATGGCAAAACCATTGTCAAAACAATCTGATTTCATACTGCTATGGATGGTCCATGTTATTTGTAACTCATTTACAGTGAGAATAGGAAGACAGAGGTGTCTGGCTCTACATAGCTATTAAAAGAGCTTTTACAGTGTATGTGATGCTGGGTTGAATTGACAGTTTGTTAAAACTCAAGTGGACAGTATTCAGTTTCCTACAACAGACATATTTTAACTGCTTTGTGATTAAGTTTAAAATACATGAATTTGCATTTAATATTGTATGCATATCCTGGCAAGAAACTTATTTTTCTTTAAAAAAAAAATCAAAAAATAGCAAATGTAGTACCTCATGAACATATATGATGGTTAACATGTACCAGGTACTCATCTAAACACTTACATTAAATCGAATCTCACAACAATGCTATATATACGCATTACTGTTATCCCTTTTTCACGTCTGAGAAAAATGAGGTGCAGAGAGATTGAATTAGTTGCTCTACTGACATGGGAAAGAGAGGCAGGATTTGAAACCAGTGCTTTCAACTATTCTTTTCTCTCAAGAGACAGAGCCTGTGTAAGTTTAAATTAAAATAAAACCAGGTCCCTACTTCTGTGTTCTTGTTTTTCCTTGTGATCCTGAAGTAACTCTATGCTATGAATGTTTTTCAATCCTGATAGTCTTCTTTGTTTTGAAGCCTTAAATAAATTCTTTATTATATTCTATTATTTATTTTTAAG
Seq C2 exon
CAGGATGTTCTATTTCTAAGCCAGATGTGATCACCCTATTGGAACAAGGGAAAGAGCCCTGGATGGTTGTGAGGGATGAGAAAAGAAGATGGACTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120784:ENST00000351218:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGATGTTCAGAGATGTGGC
R:
TAGAGTCCATCTTCTTTTCTCATCCC
Band lengths:
222-1468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains