HsaINT1047197 @ hg38
Intron Retention
Gene
ENSG00000204644 | ZFP57
Description
ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]
Coordinates
chr6:29676881-29677366:-
Coord C1 exon
chr6:29676974-29677366
Coord A exon
chr6:29676914-29676973
Coord C2 exon
chr6:29676881-29676913
Length
60 bp
Sequences
Splice sites
5' ss Seq
CCTGTACAG
5' ss Score
-5.64
3' ss Seq
CCCTGCAGGAAGCCATGAAGAGA
3' ss Score
-12.75
Exon sequences
Seq C1 exon
GTTTCTAGAAGCAGGGTAGAACAGACGGCAGACACCTAGCCCAGGCTGGTGTTGTTACTAAACAATGGCAGCTGGTGAGCCAAGGGTGACCAGGGCCCTGAACTCGGTGGCCCAGCTTTGAGGGAAGCAAAATTGTTCTCAATTGTGGAAGAGGAGAATTTGGACAGCAGAACAAAAAAGGAAGACAGCCTCTTGGAGCAGATACATTTGTCACAGGAAGCCACATCAAACCCTGGGGCCTTTGCTGGGCCTCTCCATCTGCCCAGTTACTGGGAGGTAGATAGCCCCAGGAAGGAATCCAGTCAGGCCTGGGCACCAGGCCAGGAGTGGATAAAGCTAGAAAGAGACACCACAGAAGAGAAGATGTTTGAACAGCTGAAGCCAATCGAACCT
Seq A exon
GTACAGAAGACGCTCCCATGGGTGGGCGAGGTAGCTGCCACCCTGCAGGAAGCCATGAAG
Seq C2 exon
AGAGATTGCTGGAGGGAGGCACGGGTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204644:ENST00000376883:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGGTAGATAGCCCCAG
R:
GCCTCCCTCCAGCAATCTCT
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains