HsaEX1044648 @ hg38
Exon Skipping
Gene
ENSG00000204644 | ZFP57
Description
ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]
Coordinates
chr6:29675933-29681110:-
Coord C1 exon
chr6:29681062-29681110
Coord A exon
chr6:29676685-29676801
Coord C2 exon
chr6:29675933-29676059
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATACATACTCCTGCCTGCAGGTC
3' ss Score
8.39
5' ss Seq
TTTGTTAGA
5' ss Score
-12.5
Exon sequences
Seq C1 exon
TCCCCGGGAGACCCTGTGCCCCTAAATCGCGGTCCACTGCGCGCGTCAG
Seq A exon
GTCAAATGAAATCTCAGATTGTTCCAGACTGAACGACATCCAGAAAAAGGAGCTGCAAGACCTTTCTCCATCTCCCGCACCATCCTGGCATCCTTCATGGAGTACTTCCTGAAATTT
Seq C2 exon
AAGCCAGTCACCTTTGAGGATGTGGCAGTGAATTTCACCCAGGAAGAGTGGGACTGTCTAGATGCCAGCCAGAGGGTCCTTTACCAGGATGTTATGTCGGAAACCTTTAAGAATCTAACATCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204644_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=83.7)
Main Inclusion Isoform:
ENST00000488757fB30495
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCCTGTGCCCCTAAAT
R:
CCACAGATGTTAGATTCTTAAAGGTT
Band lengths:
170-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains