HsaINT1047196 @ hg38
Intron Retention
Gene
ENSG00000204644 | ZFP57
Description
ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]
Coordinates
chr6:29676974-29681110:-
Coord C1 exon
chr6:29681062-29681110
Coord A exon
chr6:29677367-29681061
Coord C2 exon
chr6:29676974-29677366
Length
3695 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGTTTTTCTCTGACCTCAGGTT
3' ss Score
9.68
Exon sequences
Seq C1 exon
TCCCCGGGAGACCCTGTGCCCCTAAATCGCGGTCCACTGCGCGCGTCAG
Seq A exon
GTGAGTAGAGCGGCGGCGGGGAGTCGCGCTAGCGGTAGTAGAGGCTGATGTTGGATGTTGTCCCCACTCCTCTGACTCTTCCGCAGGCCAGGGGAGCACTGCGCCCCTAATCTTGGAGGGGCTTCCAACCTCTGGGGTCCTCCGGGGAAACGTGGGTTAGTCTGGGGTGTATCCAGGTGCCCTGTCCACTGTGGGCACTCTGGGGATTCCGGGCCGAGGAAGGGCTCCTGGCACGTGTTGAAAAAGTCGGCATCCCAGAAGGAAGATTCTGGGCGGATGGGCATCGGGGAAGGTAGTCCCAACCAATGGGACCGTTTCTGAGCACATAAGCGCATTCAGTGGGTGCTAACAAGCGCCTGCTTTGCCAGGCGACAGTGAGCAAAACCGGCTTTGTTCCCGGCCACCGGAAGCTTCGAGGCTGGGGTTCCGGATCTGGGCGCCCAATGACAAACTAAGCGCGGAGGACAGGGCCAGGAGCGCCCACCAGGGCGGCGATCTGGTGGGTAGGTGCAGGGCAATGGCTGGAAAGGGTCCCCGAAGCCCTGAGCAGAGACCAAAGGGCCGTGCGACTGCAGGAAGGCCATTTTGCTTGGCTGACAGGCGGAAAACTCACGTGGCTGGAGTAGCAGGGTTGGTGACGACAAGGGTGAATCCCACTAAGCATTGCAACTGTTTGCGGTGTGAGGGGTGAGGGGGATTCTCATCATTCTCAGAATTGCTGTGGATAAAGGGTTTTGGGTTGGAGAGAGACTGGGTGCACTCAAAGGACTGAAAGATGGCGACGACACATTCCCTCAGAGGATTTACATTCTGGAAGGGTGGGGACAGGCCCGGGTACAGATAAGCCCGCAGGCGGCCTCCAGCTCTTACAGTCGAAAGTCTGATGAGTTATGCCCAGTCTCCTTCCTCCTCCCGCCGGCATGAGGTTTGGGGCCCTGTGGATGAAGGAAGTTCATGGGAGGCAAACGTGCCTGGGCAAGCAACAGCCGCAGAGATTCAGTCCCCACGGGGGTTAGAATCCACACTTAGGGCCTCTGCCTACCGCCTCCAGCAAATGCCATCTTGAGGACTAGCGGCAGCAGTAGGTCTTCTCTGCCAGAGAACTGGAAGGCCAGGTTCTTGAGGGCACTGTTACTAAGGCGTTTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGAGACGGAGTTTCACTCTCATTTCCCTGGCTGGAGTGCAATGGCGCGATCTCCGCTCACCGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTACGATTACAGGCATGCGCCACCACGCCGGGATAATTTTGTATTTTTAGTAGAGACGAGGTCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCCAAGTGTTGGGATTACAGGCTGAGCCACCGTGCCCAGCCTTATTAAGGCTGTTTTGAAGTGCAGTTGGCTGGAAAGTGGAAGAATAATCCAAGATCTGCATGCCTCATAAAAGGAGTGCGAATGGTTTTGAAAGACAGGAAAGGAAAGGGAGAGAGAGGAAAGAAAGAGAGAGGAAGAAAGGAAGGAAATCAAATTCATATCCCAGGAATGCACCTTTCATGACAACATTTTGGAGATCCAATTAACTCTATTCCTCGAGGGCGTTTTTCCTTGCTGGTATTTTCAGTTCTATTAACACTTCTCAAAAAGTGAAAGGAAAAAATAGTCAACAGGGTTTTTTGGTCTTTATTCTTTTCTTTCTATCTCTAGTAAGGGAGATGTGGGTGAGTGGCTGTCAGCAGGAAAAGGTGAGAGTTCAGCTATGTTTGCATCTGAGCAGGAAATTTCCAAGGATGAGCAGGGAACTCCAGTGCTGGGCTCATTGTGAGCCCTGAATAAGTGATTGCTCTTGGGTTGTTAGCAGTATTCTTCACAAAGATCTGTATATACAGTGGTTCCCCTTATCCACAGGTGATATGTTCCAAGAGCTCTAGTGGATACTTTGTTTTTGTTGTTGTTTGAGGCAGAATCTCGCTCTGTCACCCAGGCTGGAGTACAGTGGCACAGTCTTGGCTCACTGCAACCTTCACCTCACGGGTTCAAGTAATTCTGCCTCAGCATCCTGAGCAGCTGGGACTACAGCGTGCCACCACGCCCAGCTAATTTTTGTATTTTCAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAATTCCTGCCCTGAAGTGATCCACCGCGCCCCACCCCAGTGGATACTTTGAAACCATGAATAGTACCAAACCCTGTATACACTATGGTTTTCTTTTTCTATACATACATAATAATGATAAAGTTTAATTTACAAATTAGGCATGGTAAGAGATTGACAACAATAACTAGTAATAAGATAGAACAATTACAGCAATATATTGTAATAAAAGTTGTATGAATGTGGTATCTCTCTCAAAATAATTTATATTGTAAATCTTAGCAACCTCAGCATATGATTATTTTTTCTTTCCTTAAGACAAGAATTTTTACCTTTTTATTTTATGGCTTCTCTTTGCATATCTGAATTTCCAGCGTCTCTACTCTTGTGCTTTTGGGTCATTATTAAGTAAAATAAGGCATTCTTGAGCACAGGCAACTGCTATACTACAGTAGTCAACCTGGTAACTGAGATGGCTAGCTACTAAGGAACTAATGGGCAGGTATTGTCTGCAGTGTGGATATGCTAGTCAAAGGGATGATTCACATCCTGGGCAGGCCAGAGAGAAAAGGTACAAGATTTCATCACACTACTCAGAATGTCAAGCAATTTAAAACTTAGGAATTGTTTATCTCTGGATTTTTTTTTGAGACGGAGTCTCGCTCTATGTCCCAGGCTGGAGTGCAGTGGCGCAGTCTTGGCTCATGGCAACGTCCACCTCCAGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTTGCTGGGATTACAGATGTGTGCCACTATGCCCAGCTATTTTCTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGACCAGGCTGATCTCGAACTCCTGACCTCAGATGATCTGCCTACCTCAGCCTCCCAAAATGCTGGGATTACAGGTGTGAGCCACTGTGCCTGTCCTCCGGAATTTTTCATTTAATATTTTTGAACCATGGTTGACCATGGGTAACTGAAGCATTGGAAAGCAAAACCATGATAAAGGGGAACTACTACATGTATTGAAAATCCAGATCACAGAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAATTTTGGTCATGGAAGAGATCTTAGAGAGTGTCTCCTTTATTCTCACATTTCTGATGAAACCAAGTCAGAAAGAATAAAGAGACTCACTCGAGGTGATCTGTGACAGATCCTAGCCTGGTTACCCCAGCTACATGATTTCCAATGGTACTGAGTCTAACATTAACATTAGGTTTAAACATTAACTTTTGTAGATCAAGAATGTCCACTTGTCCTTGGAAAATTATTTAGCATCTCTGCATTAGGTCCTTAAGACAGGGCCAGTAATTGTTACCTCATTGCTGAGAGCATCCAGTGGCACACTGTAGGGGTTTAGTAACTGCTGGCATTCCCTGACCAAATAAGGAAGCTGTTTCTTACCCTCCCTCTTGCTGATATGTTTTGTTTTTCTCTGACCTCAG
Seq C2 exon
GTTTCTAGAAGCAGGGTAGAACAGACGGCAGACACCTAGCCCAGGCTGGTGTTGTTACTAAACAATGGCAGCTGGTGAGCCAAGGGTGACCAGGGCCCTGAACTCGGTGGCCCAGCTTTGAGGGAAGCAAAATTGTTCTCAATTGTGGAAGAGGAGAATTTGGACAGCAGAACAAAAAAGGAAGACAGCCTCTTGGAGCAGATACATTTGTCACAGGAAGCCACATCAAACCCTGGGGCCTTTGCTGGGCCTCTCCATCTGCCCAGTTACTGGGAGGTAGATAGCCCCAGGAAGGAATCCAGTCAGGCCTGGGCACCAGGCCAGGAGTGGATAAAGCTAGAAAGAGACACCACAGAAGAGAAGATGTTTGAACAGCTGAAGCCAATCGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204644:ENST00000376883:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains