RnoINT0168402 @ rn6
Intron Retention
Gene
ENSRNOG00000022730 | Zfp57
Description
zinc finger protein 57 [Source:RGD Symbol;Acc:1302981]
Coordinates
chr20:2018268-2019836:-
Coord C1 exon
chr20:2019808-2019836
Coord A exon
chr20:2018375-2019807
Coord C2 exon
chr20:2018268-2018374
Length
1433 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TATTTTTCCTCAAACCTTAGATT
3' ss Score
7.43
Exon sequences
Seq C1 exon
GGCTTCCTGGACCAGAAAAGAACAATCAG
Seq A exon
GTAAATGAGTAAGGAGGTGGGAGGAGGTGCGCAACACCTGTCATTCCCCTTAAGCAGCCTATTATCTCTATCAAAGACCGTCCTTTGTGAATGTGCGGCTGTTGCTGTTTTTGATGATGATGATTTACCTAGCCCAGGCCGTCCTGGAGATCCTGTCTCAGCCTTCCTGAGGTTTGAGTAGCAGGCTGGGTTACCACACATCTTCATGTTATTGTGAAGACTTGATGATAAGAGCGTCTTTGCTGAGAATGGTTAGGGACAGGTCTTGGAAAACACTAGCATGCAACGGTTTCGACAGGCCCTGGAAGACACTGTTTGGAATGTGGTTTTTTTTCAACGGGAGAGTAAGGAAAGGTGAGACAGAAGGAAGGACTAAAGCCAACCTCAGATCCTAGAATGCAGCTTTTCTGGTAACCTTTTGGGGGGGTCAGAGTTAGTAATTCCCCGAATGCCTTGTTCCTCGCTGGTACTTTCACTTAGCGGAAGAATTGGGAGGGAAAGAAAGGGCAACAGGTCTCTGTGCCTTCTATAGAGGAGAAAGAGAAATAAAAATTTCCGAGTGAACAAGGAACTTAAATGCTGGCGGGTGGTTATCGCCGTGTTGTATGAGAGATACGGGATTCATGTTGCCAAGACTTAAGATGATCCAAAGTGACGGGAAAGCCTTGCCTATTCATTCAGACAACTTGTATTTTGGGGTTTGCTTTAACTTGTCCCTAGGCTAGTACTATGTGGTACATAGGGATAGATAGATAGATACTCTGTTGCTCTTCTATGCTAGGTAGTAGCCACAAGCTGCACTTTCCAGACAGCCGCAGATCAGGAAAGGAAACAACATACTCTACAGTGTATTTTGTTACTAAGCTGTGAGGCGGGTTGCTTGCATTTCTGACCTAATGATGTTTTCAGCTTGCGAGGTCATCAGAGACTAGCTCCGTTGTAAATATGGTGTCTATATATTAAACATTGAAGTGATAGAGCTTGGGGTAGGCCTAAGGCTCAGTGGTAGAGCACTTGCTTAGCAGGCACAAGCTTCTAGGTTTGAGCCCCAGGATACCCCACACACACACACACACACACATTCAAATCACAGAATGTGTGTTTTGACTTCTGGTCCCTTACTGTGAAATCAAGCCAGAGAGGTTGAAGAGACAGACTCTCAAAGTGGTATGTGACGACACATCCAGGTATGTGCTTTTCAGTGCTACTGAGTCTAGAATTAAACATCACTCTGCCGTGTGGACCACACGTCCTGGAATGGATGACTTAATGCTTACACTTCAAGTTTGTGAAAATGGAACCAATTTACCTCACTTGGCACCTCCAAGAAGGCTCCATCACAGGGCAGGAAGCTAGCGACTGGGTGTTACGGAAGAACTTGTTCCTTTGCTCTCTACTTTTGCTGACATTATATATTTTTCCTCAAACCTTAG
Seq C2 exon
ATTTCTAGAAGTGGGCACCAACAAATAGTGGCTAGAAGCAGTCTGGAGTAGAAGTCAAACACCTAGGACCAGCCTGGCATTCCCAAACAATGGCAGCTAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022730:ENSRNOT00000011704:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]