RnoEX0101523 @ rn6
Exon Skipping
Gene
ENSRNOG00000022730 | Zfp57
Description
zinc finger protein 57 [Source:RGD Symbol;Acc:1302981]
Coordinates
chr20:2018268-2019836:-
Coord C1 exon
chr20:2019808-2019836
Coord A exon
chr20:2019454-2019670
Coord C2 exon
chr20:2018268-2018374
Length
217 bp
Sequences
Splice sites
3' ss Seq
TGATGATTTACCTAGCCCAGGCC
3' ss Score
-0.59
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCTTCCTGGACCAGAAAAGAACAATCAG
Seq A exon
GCCGTCCTGGAGATCCTGTCTCAGCCTTCCTGAGGTTTGAGTAGCAGGCTGGGTTACCACACATCTTCATGTTATTGTGAAGACTTGATGATAAGAGCGTCTTTGCTGAGAATGGTTAGGGACAGGTCTTGGAAAACACTAGCATGCAACGGTTTCGACAGGCCCTGGAAGACACTGTTTGGAATGTGGTTTTTTTTCAACGGGAGAGTAAGGAAAG
Seq C2 exon
ATTTCTAGAAGTGGGCACCAACAAATAGTGGCTAGAAGCAGTCTGGAGTAGAAGTCAAACACCTAGGACCAGCCTGGCATTCCCAAACAATGGCAGCTAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022730-'3-3,'3-2,4-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCTGGACCAGAAAAGA
R:
TTCTTAGCTGCCATTGTTTGGGA
Band lengths:
132-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]