RnoEX0101525 @ rn6
Exon Skipping
Gene
ENSRNOG00000022730 | Zfp57
Description
zinc finger protein 57 [Source:RGD Symbol;Acc:1302981]
Coordinates
chr20:2014170-2019836:-
Coord C1 exon
chr20:2019808-2019836
Coord A exon
chr20:2018268-2018374
Coord C2 exon
chr20:2014170-2015583
Length
107 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCCTCAAACCTTAGATT
3' ss Score
7.43
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGCTTCCTGGACCAGAAAAGAACAATCAG
Seq A exon
ATTTCTAGAAGTGGGCACCAACAAATAGTGGCTAGAAGCAGTCTGGAGTAGAAGTCAAACACCTAGGACCAGCCTGGCATTCCCAAACAATGGCAGCTAAGAAACAG
Seq C2 exon
AAAGCAAGAAGAAACCTCAAGAACCTAACCCAAATCTGAAAGATAAGGATGATGATAAGTCCTCCACTTGCACAGGGGTATTCAAAGGTGGACCATTCTTTTTCTGTCTCACCTGTGGCAAATGTTTCAAAAAGAACACCTTCCTCTTTAATCACCAGTTTCCTGTGAGGTCCCGGAGGCTGGCGGTCACAAAGCCGCAAAGCCGCAAAGCCCTCGGTCATAAGCCCCAGCATCGCGGAGACAGGCCTTTCTTTTGCAATCTCTGTGGCAAGACTTATCGTGATGCTTCTGGACTGAGCCGTCACCGACGTGCTCACGTAGGTTATAGGCCCCGTTCCTGCCCTGAGTGTGGAAAGTGCTTCCGGGATCAGTCTGAGGTCAACCGCCACCTGAAGGTACACCAAAACAAGAAACCAGTGGCTGGCAGCCACGTGAAAGTACACCAAAACAAGCCAGTGGCTAGCAACCAGAAGCAGAAGGGTAGGGTTCCACCTACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022730_MULTIEX1-4/5=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.403
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=6.6),PF0009621=zf-C2H2=WD(100=6.3),PF128742=zf-met=WD(100=6.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCTGGACCAGAAAAGA
R:
GGCTTATGACCGAGGGCTTTG
Band lengths:
255-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]