BtaEX0040946 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017836 | ZFP57
Description
ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]
Coordinates
chr23:28733292-28737554:+
Coord C1 exon
chr23:28733292-28733819
Coord A exon
chr23:28735929-28736430
Coord C2 exon
chr23:28737474-28737554
Length
502 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTCTCTGACCTCAGGTT
3' ss Score
10.22
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGGTGGGCTAGAGTCCAAGGGATCACAAAGAGTTGGACATGACCGAGCTACGAACATATTCTTTACCACTGAGTCACTTGGGTAGCCCAACTGTGTGTTTTCATCAGAAATAATTCAATCCCTTTTCTCCCAAGAGTGAGTTAAGACTGGAAATGAAATCCTAGCCCTGGGTGGGACCAGCAGCTACAATTGGTAGGAGGGATGGGCTAGTGGGATGGGCGGATCCTTTTTCTTTTAAGCTTCCTAGATTGTTTTGAACTCTTGACTTTGGCGGTCCCACAAGCAAAGCCAGGCAGGGTACGCGGTGGGTCTGCGGAAATCGGCGAGGAGAGTGGGGTCGGGACGGGGTCCTGGCAGGGCCGGGGCGGGGTCGCGGGCTCCCGGTACATTTGCGCTGGGTTGGCGCGGCTAGCCGCTGGCCCACCGGAAGTCCTACGTCCTGGAGCCCCGGTCCTCGGCAGCGGCGG
Seq A exon
GTTCCTGGAGGTGGGCAGCAGCTAGAAGCAGGGTGAAGCAGAAGGCAGACGACACCTGCAGGGCTGCAACCTGGCATTACTGAATAGTGACTGCTGAGGCAAGGGGGACCAGGTCCCTGAACTCTGTGGCTGAGGCTTGAAGGGAATCAAAGGTGCTCTCAGTTGTGAAAGAGGAGAGTTTGGACAGCAGAACAAAAAAGGAAGATAGCCCCCTGGAGCAGATATCTTTGACACAGGAGGCCAATTCAAACCCTTTGCAAAGGCCTTTGCCAGGTCTCCCCATCTCCTCAGTTGCTGGAAGGTAGATAGCCCCAGGATGGAGCCTAGTCACCCTTGGGGGCCAGACCAGGCATGGATAAAGCTTAAAAGAGACAGCATGGAAGAGAAGGTGTCTGACCAGCCAAAGCCAGTGGAACCTGTACAGAAGCTGCTCCCTCAGGTGGACGAGGAGGGTCTGCCGAAAGCCTGGAAGGGAGAGTGCTGGTGGAAGGAGTGGGTGAAG
Seq C2 exon
ATCTGATCGCCAAGCTTGAGCAAGAAGAGAAACAGTGGGAAGCGGATCTCTGTTCCCCGAATGGAGAAGGCTTTCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017836_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGAGGGATGGGCTAGTGG
R:
GAAAGCCTTCTCCATTCGGGG
Band lengths:
350-852
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development