BtaALTA0033731-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017836 | ZFP57
Description
ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]
Coordinates
chr23:28736887-28737554:+
Coord C1 exon
chr23:28736887-28737013
Coord A exon
NA
Coord C2 exon
chr23:28737474-28737554
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
AATCTTTCTGTCTAATCTAGATC
3' ss Score
9.62
Exon sequences
Seq C1 exon
AAGCCAGTCACCTTTGAGGATGTGGCAGTAAACTTCACCCAGGAAGAGTGGAAATGTCTAGATGTCAGTCAGAGGGTCCTCTACCAGGATGTTATATCAGAGACTGTCAGAAACTTGATGTCTGTGG
Seq A exon
NA
Seq C2 exon
ATCTGATCGCCAAGCTTGAGCAAGAAGAGAAACAGTGGGAAGCGGATCTCTGTTCCCCGAATGGAGAAGGCTTTCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017836-3-6,3-5,3-4-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCACCCAGGAAGAGTGGA
R:
GCTCAAGCTTGGCGATCAGAT
Band lengths:
117-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development