BtaEX0040947 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017836 | ZFP57
Description
ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]
Coordinates
chr23:28733292-28737554:+
Coord C1 exon
chr23:28733292-28733819
Coord A exon
chr23:28736887-28737013
Coord C2 exon
chr23:28737474-28737554
Length
127 bp
Sequences
Splice sites
3' ss Seq
AATCTTTCCTGTTCTTCCAGAAG
3' ss Score
8.48
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
TCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGGTGGGCTAGAGTCCAAGGGATCACAAAGAGTTGGACATGACCGAGCTACGAACATATTCTTTACCACTGAGTCACTTGGGTAGCCCAACTGTGTGTTTTCATCAGAAATAATTCAATCCCTTTTCTCCCAAGAGTGAGTTAAGACTGGAAATGAAATCCTAGCCCTGGGTGGGACCAGCAGCTACAATTGGTAGGAGGGATGGGCTAGTGGGATGGGCGGATCCTTTTTCTTTTAAGCTTCCTAGATTGTTTTGAACTCTTGACTTTGGCGGTCCCACAAGCAAAGCCAGGCAGGGTACGCGGTGGGTCTGCGGAAATCGGCGAGGAGAGTGGGGTCGGGACGGGGTCCTGGCAGGGCCGGGGCGGGGTCGCGGGCTCCCGGTACATTTGCGCTGGGTTGGCGCGGCTAGCCGCTGGCCCACCGGAAGTCCTACGTCCTGGAGCCCCGGTCCTCGGCAGCGGCGG
Seq A exon
AAGCCAGTCACCTTTGAGGATGTGGCAGTAAACTTCACCCAGGAAGAGTGGAAATGTCTAGATGTCAGTCAGAGGGTCCTCTACCAGGATGTTATATCAGAGACTGTCAGAAACTTGATGTCTGTGG
Seq C2 exon
ATCTGATCGCCAAGCTTGAGCAAGAAGAGAAACAGTGGGAAGCGGATCTCTGTTCCCCGAATGGAGAAGGCTTTCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017836_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTTGACTTTGGCGGTCC
R:
TCCGCTTCCCACTGTTTCTCT
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development