MmuEX6077676 @ mm10
Exon Skipping
Gene
ENSMUSG00000036036 | Zfp57
Description
zinc finger protein 57 [Source:MGI Symbol;Acc:MGI:99204]
Coordinates
chr17:37004797-37010632:+
Coord C1 exon
chr17:37004797-37004903
Coord A exon
chr17:37006050-37006194
Coord C2 exon
chr17:37009419-37010632
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCTGTATTTACATTCTAAGTCT
3' ss Score
4.25
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
ATTTCTAGAAGTGGGCACCAACAAATTGTGGCTAGAAGCAGTCTGGAATAGAAGTCAAACGCCTAGGACCAGCCTGGCATTACCAAACAATGGCAGCTAGGAAACAG
Seq A exon
TCTTCCCAGCCATCCAGGACACCAGTCAGTTATGAGGACGTGGCAGTGTCTTTCACCCAGGAAGAATGGGAATATCTTACTTCTACACAGAAGACCCTTTACCAGAAAGTGATGTCAGAAACCTTCAAGAACCTGACATTTGTCG
Seq C2 exon
GAAGCAAGAAGAAACCTCAAGAACCTAGCTCAGATCTGCAAGATAAGAACGAGGAGCAGGAGAAGTCCTCCAGTTGCACAGGGGTATTCAAAGGTGGACCATTCTTTTTCTGTCTGACCTGTGGCAAATGTTTCAAAAAGAACACCTTCCTCTTTAATCACCAGTTTCCTGTGAGGTCCCGGAGGCTGGCAGTCACAAATCCACAAAGCCGCAAAGGCAAGGGCTACAAGGCTCAGCATCGTGGAGAGAGGCCTTTCTTTTGTAATTTCTGTGGCAAGACTTACCGTGATGCTTCTGGACTGAGCCGTCACCGACGTGCTCATTTAGGTTATAGGCCCCGTTCATGCCCTGAGTGTGGAAAGTGTTTCCGGGATCAGTCTGAGGTCAACCGTCACCTGAAGGTACACCAAAACAAGCCAGCAGCTAGCAACCAGGCTGGCAACCAGGCTAGCAACCAGAGGCTGAAGAGTAGGGTTCCACCTACAACACCTAGATCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036036_MULTIEX1-5/5=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.106 C2=0.358
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=89.1)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=6.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCAAACGCCTAGGACCA
R:
GATTTGTGACTGCCAGCCTCC
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types