HsaEX6046099 @ hg38
Exon Skipping
Gene
ENSG00000204644 | ZFP57
Description
ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]
Coordinates
chr6:29675386-29677154:-
Coord C1 exon
chr6:29676881-29677154
Coord A exon
chr6:29675933-29676059
Coord C2 exon
chr6:29675386-29675487
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGTCTCTCCTGTTCTTCCAGAAG
3' ss Score
7.77
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACAGGAAGCCACATCAAACCCTGGGGCCTTTGCTGGGCCTCTCCATCTGCCCAGTTACTGGGAGGTAGATAGCCCCAGGAAGGAATCCAGTCAGGCCTGGGCACCAGGCCAGGAGTGGATAAAGCTAGAAAGAGACACCACAGAAGAGAAGATGTTTGAACAGCTGAAGCCAATCGAACCTGTACAGAAGACGCTCCCATGGGTGGGCGAGGTAGCTGCCACCCTGCAGGAAGCCATGAAGAGAGATTGCTGGAGGGAGGCACGGGTGAAGAAG
Seq A exon
AAGCCAGTCACCTTTGAGGATGTGGCAGTGAATTTCACCCAGGAAGAGTGGGACTGTCTAGATGCCAGCCAGAGGGTCCTTTACCAGGATGTTATGTCGGAAACCTTTAAGAATCTAACATCTGTGG
Seq C2 exon
CCAGAATCTTTCTGCATAAGCCAGAGCTAATCACCAAGCTTGAGCAAGAAGAGGAACAGTGGAGAGAGTTTGTCCATCTCCCAAACACAGAAGGCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204644-'6-11,'6-7,8-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENST00000488757fB30495
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGGTAGATAGCCCCAG
R:
AGCTTGGTGATTAGCTCTGGC
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains