RnoEX0101526 @ rn6
Exon Skipping
Gene
ENSRNOG00000022730 | Zfp57
Description
zinc finger protein 57 [Source:RGD Symbol;Acc:1302981]
Coordinates
chr20:2014170-2018374:-
Coord C1 exon
chr20:2018268-2018374
Coord A exon
chr20:2016893-2017043
Coord C2 exon
chr20:2014170-2015583
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCAAGTCTCTGTATTTACAGTCT
3' ss Score
4.42
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATTTCTAGAAGTGGGCACCAACAAATAGTGGCTAGAAGCAGTCTGGAGTAGAAGTCAAACACCTAGGACCAGCCTGGCATTCCCAAACAATGGCAGCTAAGAAACAG
Seq A exon
TCTAAGTCTGCCAAGGCGTTAAGGACAACAGTCAGATATGAGGACGTGGCAGTGTCTTTCACCCAGGAAGAATGGGAATATCTGACTTCTACACAGAAGACCCTTTACCAAAAAGTGATGTCAGAAACCTTCAAGAACCTGACATTTGTGG
Seq C2 exon
AAAGCAAGAAGAAACCTCAAGAACCTAACCCAAATCTGAAAGATAAGGATGATGATAAGTCCTCCACTTGCACAGGGGTATTCAAAGGTGGACCATTCTTTTTCTGTCTCACCTGTGGCAAATGTTTCAAAAAGAACACCTTCCTCTTTAATCACCAGTTTCCTGTGAGGTCCCGGAGGCTGGCGGTCACAAAGCCGCAAAGCCGCAAAGCCCTCGGTCATAAGCCCCAGCATCGCGGAGACAGGCCTTTCTTTTGCAATCTCTGTGGCAAGACTTATCGTGATGCTTCTGGACTGAGCCGTCACCGACGTGCTCACGTAGGTTATAGGCCCCGTTCCTGCCCTGAGTGTGGAAAGTGCTTCCGGGATCAGTCTGAGGTCAACCGCCACCTGAAGGTACACCAAAACAAGAAACCAGTGGCTGGCAGCCACGTGAAAGTACACCAAAACAAGCCAGTGGCTAGCAACCAGAAGCAGAAGGGTAGGGTTCCACCTACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022730_MULTIEX1-5/5=4-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=80.4)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=6.6),PF0009621=zf-C2H2=WD(100=6.3),PF128742=zf-met=WD(100=6.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAACACCTAGGACCAGCC
R:
CTTTGTGACCGCCAGCCTC
Band lengths:
248-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]