RnoEX0101524 @ rn6
Exon Skipping
Gene
ENSRNOG00000022730 | Zfp57
Description
zinc finger protein 57 [Source:RGD Symbol;Acc:1302981]
Coordinates
chr20:2014170-2026011:-
Coord C1 exon
chr20:2025592-2026011
Coord A exon
chr20:2020561-2020573
Coord C2 exon
chr20:2014170-2015583
Length
13 bp
Sequences
Splice sites
3' ss Seq
TAAATTTCTGACCTTGGCAGACA
3' ss Score
6.21
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
ATTTGGGTGCTCAGAAGCATCTTCAACCTCTACAACAAACCTTGCCCGGGGTTTCAGTAGGCCATCCCTGAGTGGTTTCCAGACAATCCTCTCCCCTACACGGAGAGCGCCCTCGTGTGGCCATAATTTTGAGGCTAGAAGACCCTGCGACCTTTTACAGAAACTTCCTGGAGATCTGAGTCTCAAAGCAATGTCAAGTGCTGGCACAGAGTCTGAGTGCTTCCCAAATCCAGGCAAACACAGATGCGCCCTCTTCTTTTAAGGGATGGTGGACTCTGACTCGCGATACAAGTCTCCAGCTTGACTACAGAGCTAGTTTGTAGCTTCCATTTGTGCTGGAACTTCACTCCTTCTGGAACTAGCCGAAGAACATTCCACAAATAATACGGGAGAGGAGCCAGAACCACCCAGGGTATTGTC
Seq A exon
ACAGCCACTCGAG
Seq C2 exon
AAAGCAAGAAGAAACCTCAAGAACCTAACCCAAATCTGAAAGATAAGGATGATGATAAGTCCTCCACTTGCACAGGGGTATTCAAAGGTGGACCATTCTTTTTCTGTCTCACCTGTGGCAAATGTTTCAAAAAGAACACCTTCCTCTTTAATCACCAGTTTCCTGTGAGGTCCCGGAGGCTGGCGGTCACAAAGCCGCAAAGCCGCAAAGCCCTCGGTCATAAGCCCCAGCATCGCGGAGACAGGCCTTTCTTTTGCAATCTCTGTGGCAAGACTTATCGTGATGCTTCTGGACTGAGCCGTCACCGACGTGCTCACGTAGGTTATAGGCCCCGTTCCTGCCCTGAGTGTGGAAAGTGCTTCCGGGATCAGTCTGAGGTCAACCGCCACCTGAAGGTACACCAAAACAAGAAACCAGTGGCTGGCAGCCACGTGAAAGTACACCAAAACAAGCCAGTGGCTAGCAACCAGAAGCAGAAGGGTAGGGTTCCACCTACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022730_MULTIEX1-1/5=C1-C2
Average complexity
ME(1-2[100=100])
Mappability confidence:
86%=100=86%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.403
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=6.6),PF0009621=zf-C2H2=WD(100=6.3),PF128742=zf-met=WD(100=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAACCACCCAGGGTATTG
R:
TGAATACCCCTGTGCAAGTGG
Band lengths:
107-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]