RnoINT0168401 @ rn6
Intron Retention
Gene
ENSRNOG00000022730 | Zfp57
Description
zinc finger protein 57 [Source:RGD Symbol;Acc:1302981]
Coordinates
chr20:2019808-2020537:-
Coord C1 exon
chr20:2020343-2020537
Coord A exon
chr20:2019837-2020342
Coord C2 exon
chr20:2019808-2019836
Length
506 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
CGGTCTTCTTGCATTCTTAGGGC
3' ss Score
9.5
Exon sequences
Seq C1 exon
GAGCGGAAGCGGAGGGACTAAGTAGCGGATTCCTGACTTCGGGCTCGGGCCCCTTCCTGGGTTCACGCCGCTGCCTTCTGGTCTGGGCTGGAACGCGCCCAACCCTTTGTGGGGCTGTGGTCTGAGGCAACGGCTCAGAAGACGAGCACCGGGGACGGCGGGGCTGCCGAGCCCCGAGTAGGGCTGTCGAACGCG
Seq A exon
GTGAGAACGTGCGGGGACCCGGGTGGAGCCCCGCGATGGAGCCATGAAGGCCGATACCTGGGCTGGGAGAAGCCGCCTGGCCCTCGGTGGAAAAGCTCACGTGGCTGAAATCCCGGGGGATTCGGGGCTGGGACCCGGGCAGACCCAGCAAAGCCTAGGGCATGCGGGCATTTCTCCTCAGATTGTGTGCCTGAGAGCGGTGGGGCCTCAGATTTAGAGAGAGGAATAGACAGGGTCTCTCGTTGCAAGTCTGCCTGGTCTTCCTGTCTTAGCTTCCTTTGTGTTACTGGAGCTGACTCGGATTTGTGAAACCATGAGTGGGTTTTAGCTGGAGGAGTGCACTCAGGGTTGAAAGATGTCTGCACAGACCTTCCAGAAATTTACCCAACAGAAGGGTGAGGCCAGGCCTGGCCTATCTCCCATGCCAGCGGGGTGGGAGTTGGGAGGGACAGGACCTGACCTGCCAATCAACAGCCAAGTCTTATTCGGTCTTCTTGCATTCTTAG
Seq C2 exon
GGCTTCCTGGACCAGAAAAGAACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022730:ENSRNOT00000011704:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGCGGAGGGACTAAGTA
R:
TTCTTTTCTGGTCCAGGAAGCC
Band lengths:
214-720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]