MmuINT1035646 @ mm10
Intron Retention
Gene
ENSMUSG00000036036 | Zfp57
Description
zinc finger protein 57 [Source:MGI Symbol;Acc:MGI:99204]
Coordinates
chr17:37002452-37003315:+
Coord C1 exon
chr17:37002452-37002777
Coord A exon
chr17:37002778-37003285
Coord C2 exon
chr17:37003286-37003315
Length
508 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
TTAGTCTCTTGCCTTCTCAGGGC
3' ss Score
9.78
Exon sequences
Seq C1 exon
CTGAGACCAGTGAAGACCAACAGTAGGCGGGACGAGAAGGCGTGGCATTCAGGCATTGGGCTTCTTCAGATCTAAATTTCTGACCTTGGCAGACAGCCACTTGAGATGTGTTACCTGCGGACGGAGCAGAACGGAAGCAGAGGGACAAAGTAGCGGATTCCTGACTTCTGGCAAGGGCCCCTTCCTGGGTTTCACGCCGCTGCGTTCTGGTCGAGGCTGGAACGCGCGCCCAGCCCTTTGTGTGGCTGTGGTCCGAGGCTACGGCTCAGAAGCCGAGCGCTGGGAACGGCAGGACTGCCGAGCCTCAAGTAGGGCTGTCGAGCGCG
Seq A exon
GTGAGAGCGTGCGGGGACCCGGGTGGAGCCGCTCCCTCGGTGGAGCCACGAGGGCCCGACACCTGGGTGGGAGAAGCCGCCTGGCTCCGCGGTGGAAAGGCTCACGTGGCTGAAACCTCGGGGGATTAGAGTCTGGGACCGGGGCTGACCGGGCAAAGCCGGCGGGCATTTCTTGTCAGATTGTGCGTGAGAGCGGCGGGGCCACAGATTTTAGAGAGCCGGACAGACGGGGTGTATTGTGGCAAGTTTGCCTGATCTTCCTGTCTTAGCTTCCTTTGTGCTATTGGGGCTGACTCCTCAGATTTGTGAAACAATGAATGGGCTTTAGTTGGAGGAGTGCACTCAGGGTTGAGAGACGTCTGCACAGTCCCTCCAGAAATTTACCCAGTGGAAGGGTGAGGCCAGGCCTGGCCCATCTCCCATGCCAGGGGGGTGGGAGTCGGGAGGGACGGGACCTGACCTCCGGCCAATCAACAGCCAAGTCTTATTTAGTCTCTTGCCTTCTCAG
Seq C2 exon
GGCTCCTGCACCAGGAAAGAACAATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036036:ENSMUST00000089968:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGACCAACAGTAGGCGG
R:
TCTGATTGTTCTTTCCTGGTGCA
Band lengths:
346-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types