BtaINT0164385 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017836 | ZFP57
Description
ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]
Coordinates
chr23:28735960-28737013:+
Coord C1 exon
chr23:28735960-28736430
Coord A exon
chr23:28736431-28736886
Coord C2 exon
chr23:28736887-28737013
Length
456 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AATCTTTCCTGTTCTTCCAGAAG
3' ss Score
8.48
Exon sequences
Seq C1 exon
GGTGAAGCAGAAGGCAGACGACACCTGCAGGGCTGCAACCTGGCATTACTGAATAGTGACTGCTGAGGCAAGGGGGACCAGGTCCCTGAACTCTGTGGCTGAGGCTTGAAGGGAATCAAAGGTGCTCTCAGTTGTGAAAGAGGAGAGTTTGGACAGCAGAACAAAAAAGGAAGATAGCCCCCTGGAGCAGATATCTTTGACACAGGAGGCCAATTCAAACCCTTTGCAAAGGCCTTTGCCAGGTCTCCCCATCTCCTCAGTTGCTGGAAGGTAGATAGCCCCAGGATGGAGCCTAGTCACCCTTGGGGGCCAGACCAGGCATGGATAAAGCTTAAAAGAGACAGCATGGAAGAGAAGGTGTCTGACCAGCCAAAGCCAGTGGAACCTGTACAGAAGCTGCTCCCTCAGGTGGACGAGGAGGGTCTGCCGAAAGCCTGGAAGGGAGAGTGCTGGTGGAAGGAGTGGGTGAAG
Seq A exon
GTGAGGAGACCAAGCGAGAGGAAGGGAGGGAGGGCCCGGGTCCTGGACTCCAGGAGCTCCTTCATCCATTATCCTGTCTGCAGACCAAATGGAATCTCAGAAGGTTCCAAGCTGTAAAGCATCCAGGAGAAGGGGCTCCGAGTCCTTTTTTCAGCTTCCATACCAACCTGGAATCCTTCAAGGACTACTTGCTGAAATTCATCAGAGTGGCAGCCTTTCATCCTCCCTACTTTCATTCGTACATACCCCTGCCTTCTCCCCCTGCATTGTTCTCCCTTCCTCTCCACCCTTCCTTTCCTGTCTGTACATTAAAGTTGCTGACTTTGTACTTGTCTTTTCCTATTCCTATTTCTTCTCTCCTTCCGTGGTTTTCCTTTTCTCTTAGTGTTCTAAACCTTTAGACTGGATGTCTGTCTGTCTGTATACAAACTCCCCGAATCTTTCCTGTTCTTCCAG
Seq C2 exon
AAGCCAGTCACCTTTGAGGATGTGGCAGTAAACTTCACCCAGGAAGAGTGGAAATGTCTAGATGTCAGTCAGAGGGTCCTCTACCAGGATGTTATATCAGAGACTGTCAGAAACTTGATGTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017836:ENSBTAT00000023710:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAGATAGCCCCCTGGAG
R:
TCCACTCTTCCTGGGTGAAGT
Band lengths:
357-813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]