MmuEX0053463 @ mm10
Exon Skipping
Gene
ENSMUSG00000036036 | Zfp57
Description
zinc finger protein 57 [Source:MGI Symbol;Acc:MGI:99204]
Coordinates
chr17:37003286-37006194:+
Coord C1 exon
chr17:37003286-37003315
Coord A exon
chr17:37004797-37004903
Coord C2 exon
chr17:37006050-37006194
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTCTTAAACCTTAGATT
3' ss Score
8.51
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGCTCCTGCACCAGGAAAGAACAATCAGAG
Seq A exon
ATTTCTAGAAGTGGGCACCAACAAATTGTGGCTAGAAGCAGTCTGGAATAGAAGTCAAACGCCTAGGACCAGCCTGGCATTACCAAACAATGGCAGCTAGGAAACAG
Seq C2 exon
TCTTCCCAGCCATCCAGGACACCAGTCAGTTATGAGGACGTGGCAGTGTCTTTCACCCAGGAAGAATGGGAATATCTTACTTCTACACAGAAGACCCTTTACCAGAAAGTGATGTCAGAAACCTTCAAGAACCTGACATTTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036036_MULTIEX1-4/5=1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.106
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCAGGAAAGAACAATCA
R:
CGACAAATGTCAGGTTCTTGAAGG
Band lengths:
170-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types